Haemophilus influenzae C486: NTHIC486_00243
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Entry
NTHIC486_00243 CDS
T03721
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hic
Haemophilus influenzae C486
Pathway
hic03030
DNA replication
hic03430
Mismatch repair
hic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NTHIC486_00243 (dnaE)
03430 Mismatch repair
NTHIC486_00243 (dnaE)
03440 Homologous recombination
NTHIC486_00243 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hic03032
]
NTHIC486_00243 (dnaE)
03400 DNA repair and recombination proteins [BR:
hic03400
]
NTHIC486_00243 (dnaE)
Enzymes [BR:
hic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NTHIC486_00243 (dnaE)
DNA replication proteins [BR:
hic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NTHIC486_00243 (dnaE)
DNA repair and recombination proteins [BR:
hic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NTHIC486_00243 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AJO89012
LinkDB
All DBs
Position
231724..235203
Genome browser
AA seq
1159 aa
AA seq
DB search
MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS
SGMKPIIGADVKVKSTLCGDEYFDLTLLAKNNEGYKNITLLLSKAYQRGYNDLPYIDQDW
LIEHREGVIILSGGTQGDIGKKLLKENVAEIESAVAFYQEFFADHFYLALTRTGKPDEER
YIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDPKRPKYYTSQQYF
RSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDLSTEDFLVQKSKEGL
EERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE
TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ
LQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDNEGLHPVTH
FDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVRKGKPRVDIAAIPLDDPESFELL
KRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREE
VSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEM
AKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
EFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHHFSVNEQGEIVYGIGAIKG
VGEGPIEALVTARNKGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLGPHRAALSK
NLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTPPYTEKQILDGERETLGLY
LSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVASRIAITKKGNRLGIATLDD
RSGRLDLTLFGESLEQFGEKLQKDTVVVASGQVSFDDFSGGLKMAVRELMTLDEARSRYV
KSLAISLSEHQITPSFIKQLKALLEPVSGGTLPINVYYQSPKGRALLRLGVQWSIIPTDE
ILTELVNLLGESAVELEFE
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcccaacctcgtttcgtccatcttcgcacgcacacagatttttcgatgattgac
agtattgtcaaagtgaaacctttagtgaaagcctgtgcagctaatgaaatggtcgcgatg
ggattaacggattttactaatttttgtggtgtggtgcgtttttatggcgaaatgctttct
tcgggtatgaagccaattatcggtgcagatgtaaaagtaaaaagcacattgtgtggcgat
gaatactttgatcttactttgctggctaaaaataatgaaggctataaaaatattacttta
ttgttatcaaaagcttatcagcgaggttataacgatttaccttatattgatcaagattgg
ttaattgaacatcgcgaaggtgtgattattttatctggcggcacgcaaggcgatataggt
aaaaaattgttgaaagaaaacgtagccgaaattgaaagtgcggtcgctttttaccaagaa
ttttttgctgatcatttttatcttgcacttacgcgtactggcaaaccagatgaagaacgt
tatatccaagcagcattaaaattagctaaaagtcatggattgcctttggtggcgacgaac
gatgtgatgtttttgaaatctgatgattttgaggctcatgaaattcgcgtagcgattcac
gatggctatactttagacgatcctaaacgtccgaaatattatacctcacagcaatatttc
cgcagcgaagacgaaatgtgtaagctgtttgctgacattccttccgctcttgaaaatact
ttattaattgcgcaacgttgtagtgtcactttgcgtctcggtcaatatttcttacctcaa
ttcccgacgggagatttaagtacagaagatttcttagtacaaaaatccaaagagggcttg
gaagaacgtttagcttttttattccctgatgaaaaagtgcggttagaaaaaagaccaaaa
tatgatgaacgcttgcaggttgagctggatgtgattaaccaaatgggattcccaggttat
tttttgatcgtaatggaatttattcagtggtcgaaagataacgatattcctgttggacca
ggtcgtggttctggtgcgggttcattagtggcttacgcattaaaaattactgatttagat
ccgctagaattcgatttactttttgaacgtttcttaaatccagaacgtgtgtctatgccc
gatttcgacgtggatttctgtatggatggtcgcgatcgcgtgattgaacacgttgcagaa
acttatggtcgtggcgcggtatcgcaaattattacctttggtacgatggctgcgaaagcg
gttattcgtgatgtggggcgcgtattggggcatccgtatggtttcgttgatcgtatttcg
aaattaattccgccagatccaggtatgacgctcgccaaagcatttgaagccgagccgcaa
ttacagactgcttacgatagcgatgaagaagtacaagcgttgattgatatggcacgtaaa
ctggagggcgtaacccgtaatgcaggtaaacatgcaggtggcgtggtcatttcgccaacc
ttaattactgatttttcaccactctattgtgataatgaaggcttacatccagttactcac
tttgataaaaatgatgtggaatatgcggggcttgtgaaattcgacttcttaggcttgcgt
actctcactatcattaaatgggcattagatatgattaatgttcgtatggtgcgtaaaggc
aagcctcgagtagatattgccgccattccacttgatgatcctgaatcttttgaattactt
aaacgttccgaaaccaccgccgtgttccagttggaatcgcgtggtatgaaagatttgatc
aaacgcctgcaacctgactgttttgaagatattatcgcattggtagcattgttccgtcct
ggcccgttgcaatcgggcatggtagataactttatcgaccgtaaacacgggagggaagaa
gtatcttaccctgacgcagaatatcaacatgaaagcttgaaacctattcttgagccgact
tacggcattattttgtatcaagaacaagtgatgcaaattgcgcaggtgttggctggctat
accttgggtggggctgacttattgcgtcgagcaatgggtaagaaaaagccagaggaaatg
gcaaaacagcgttctgtatttaaagaaggtgcggagaaaaacggtgttgatggcgagcta
tctatgaagattttcgacttagtagaaaaatttgctggctatggttttaataaatctcac
tccgctgcttatgccttggtgtcttaccaaaccctttggctcaaaacccatttccctgca
gaatttatggctgcagtgatgacatctgaaatggataatacggataaaatcgtaggtttg
tacgacgaatgtttgcgtatgggcttaaaagtaacgccaccagatattaatatcggcaaa
caccattttagcgtcaatgaacaaggcgaaattgtatatggtattggcgcaattaaaggt
gtgggggaaggcccgattgaagcacttgtgacggcaagaaataaaggggggattttcaaa
gatttattcgatttatgcgctcgtgtagatttgaaaaaaattaaccgtcgtacctttgaa
agcctaattatgtcgggcgcctttgataaattaggcccacatcgcgccgcactttctaag
aatttagaagatgcgcttagagcttctgatcaacatgcgaaagatgaagcaataggacaa
acagatatgttcggcgtgctgactgaaacccatgaagacgtagaaaatgcctatgctaat
acaccaccttacactgaaaaacaaattcttgatggcgaacgagaaaccttggggctttat
ttaagcagccatcctgttagccgttatttgaaagaactttcacattacacatcgacgcga
ttgaaagatcttgcaccaaatcgccgtggacaaattagcactgtggcgggattattggtc
gcatcacgaattgcaatcacaaaaaaaggcaatcgcttaggcattgccacattagacgat
cgttctggtcgcttagatttaacattatttggcgaaagcctagagcaatttggtgagaaa
ttacaaaaagataccgttgttgttgcttctgggcaagtgagctttgatgatttttctggc
ggcttaaaaatggcggtgcgagagttaatgaccttagacgaagcacgttcccgttatgtc
aaatccttagctattagtctttctgagcaccaaattacaccaagtttcattaaacaactt
aaagcattacttgagccagtgagtggtggaaccttgccgattaacgtgtattatcaaagt
ccgaaaggtcgtgcgttgttacgtttaggcgtgcaatggtcaattattccaacagatgaa
attctgacggaattagtgaatttacttggcgaaagtgcggtggaattagagtttgaataa
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