Haemophilus influenzae R2846 (nontypeable): R2846_0783
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Entry
R2846_0783 CDS
T01980
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hie
Haemophilus influenzae R2846 (nontypeable)
Pathway
hie03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R2846_0783 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hie03400
]
R2846_0783 (mfd)
Enzymes [BR:
hie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R2846_0783 (mfd)
DNA repair and recombination proteins [BR:
hie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R2846_0783 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
SecA_DEAD
DUF6007
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADO96194
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All DBs
Position
817544..820984
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AA seq
1146 aa
AA seq
DB search
MKTAFFQPDIPTQPNDHKILGNVLPGADALAISEIAEQNQSLTVVVTPDTRSAVRLSRVL
SELSSQNVCVFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCP
PQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSVVP
FRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEFPTDDKGIEFFRAQFRETFGEIR
REPEHIYQQISKGTLISGIEYWQPLFFAEMATLFDYLPEQTLFVDMENNQTQGERFYQDA
KQRYEQRKVDPMRPLLSPEKLWLNVDEVNRRLKSYPRITFKAEKVRSSVRQKNLPVAALP
EVTIQSQQKEPLGQLRQFIEHFKGNLLFSVETEGRRETLLDLLSPLKLKPKQIQSLEQIE
NEKFSLLVSSLEQGFIIEQSLPVAIIGEANLLGERVQQRSRDKRKTINPDTLVRNLAELK
IGQPVVHLDHGVGRYGGLITLDTGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSDE
SAPLHKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFKYDREEFQQFSATFP
FEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPT
TLLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLTEGKVDILIGTHKLIQSDV
KFNDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIST
PPARRLSIKTFVRQNDDLVVREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARV
IVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGEL
LGNEQSGQIESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADIELRVPALLPDDYLG
DVNMRLSFYKRIAAAESKAELDELKVELIDRFGLLPDATKNLLQITELRLLVEPLNVVRI
DAGTQGGFIEFSAKAQVNPDKFIQLIQKEPIVYRFDGPLKFKFMKDLSDNKVRLEFVVDL
LRTIAA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacggcttttttccaacctgatattccaacccaacccaatgatcacaaaatttta
ggcaatgtattaccaggtgctgatgcattggcgattagtgaaattgcagagcaaaatcaa
agtttaaccgtagtggtgacaccagatactcgaagtgcggtgcgtttatcacgtgtttta
tcggaattaagcagtcaaaatgtatgcgtatttcctgactgggaaaccttaccttacgat
accttttctccccatcaagaaattatttcctctcgtttaagtgcgcttttccatttacaa
aatgcgaaaaaaggcattttcttattgccaatttcgacattaatgcaacgcctttgcccg
ccacaatatttacaacacaatgtgcttctgattaaaaaaggcgatcgtttggtcatcgat
aaaatgcgcttacaattagaagctgcgggctatcgagctgtggagcaagtattagaacac
ggtgaatacgcggttcgtggagccttgttggatcttttcccaatgggaagtgtggtgcct
tttcgccttgatttttttgatgatgaaattgattccattcgcacttttgatgtggatacg
caacgtactcttgatgaaattaactcaattaatcttttgccggctcacgaatttccaacg
gatgacaaagggattgaattttttcgtgcgcaatttcgtgaaacctttggggagattcgc
cgagagcccgaacatatttatcagcaaattagtaaaggtaccttgatttctggcattgaa
tattggcagccacttttctttgctgaaatggcgactttgtttgattatttgccagaacaa
acgctgtttgtggatatggaaaataaccaaacgcaaggcgagcgtttttatcaagatgcc
aaacagcgttatgaacaacgtaaagtggatccgatgcgtccgcttttatcgcctgaaaaa
ttatggcttaatgtagatgaagtcaatcgccgattgaaatcttatccacgtattacattt
aaagcggaaaaagtgcggtcatcggtacgccagaaaaatttacctgttgccgctctacca
gaagtgaccattcaatcccagcaaaaagaaccattgggacaactccgccaatttattgag
cattttaaaggaaatttattgttttctgtggagacggaaggtcgccgagagactttgctt
gatttgctttcaccgttaaaactcaagccaaaacaaattcaatctttggaacagattgaa
aatgaaaaatttagcttgttagtcagctctcttgaacaaggttttataattgaacaatcg
cttcctgttgcgattattggcgaagctaatttgcttggcgaacgtgttcaacaacgttct
agagacaaacgtaaaacaattaatcctgatacgcttgtacgaaatcttgccgaactgaaa
atagggcagccagttgtgcatcttgatcacggtgtgggacgttatggcggtttgattacc
ttagatacaggcggcattaaagccgaatatttgctactaaattatgcaaatgaatcgaaa
ctttatgtgccagtgacttcattacatttgattagccgttatgttggtggttctgatgaa
agtgcgccattacataaattagggaacgaggcttgggcgaaatcacgccaaaaagcagcg
gagaaaattcgtgatgtggcggcagagttattagatgtttacgcacaacgtgaagcgaag
aaaggctttgcctttaaatatgatcgtgaagaatttcaacaattttccgcaacctttcct
tttgaagaaacctacgatcaggaaatggcaattaatgcggtaatttcggatatgtgtcag
ccaaaagcaatggatcgccttgtttgtggtgatgtgggttttggtaaaactgaagtggca
atgcgcgctgcctttttggctgtgatgaatcataagcaagtagcagtgctagtgccaacc
acactgttagcccaacagcattatgagaattttaaagatcgttttgcgaatttacctgtg
aatgtcgaagtgttatcgcgtttcaaaactgcaaaagaacaaaaacaaattctggaaaac
cttacagaaggcaaagtcgatatactgattggtacccataaattaattcaatcagatgta
aaatttaacgatcttggattgttgattattgatgaagaacatcgttttggtgtagggcaa
aaagagaaaatcaaacagcttcgtgcgaatatcgatattcttacgctaacggcaacgcca
attcctcgaacgcttaatatggcgatgaatggcattcgtgatctttccattatttctacg
cctcctgcgcgccgattaagtattaaaaccttcgtccgtcagaatgacgatcttgttgta
cgagaagcgattttgcgtgaaattctccgaggtgggcaggtttattatctccacaatgat
gtcgcaagcattgaaaatacagcagaaaaactgaccgcacttgtgccagaagcacgagtg
attgtagggcatggacaaatgagagaacgtgagttagaacgtgtgatgagtgatttttat
catcagcgttataacgtcttagtttgttcaaccattatcgaaacgggtattgatgtacca
acggcaaataccattattattgaacgagcggatcattttggtttggctcagttgcatcaa
ttacgtggacgagttgggcgttcacatcatcaggcttatgcttatttgcttacgccaccg
ccaaagatgatgacaaaagatgctgaacgccgtctagatgcgttggaaaatcttgataat
cttggggctggttttatcttggcaacccacgatttagagattcgtggtgctggcgaatta
cttggaaacgaacaaagtggacaaattgaaagcatcggtttttcgctttatatggaatta
ttggatgcagcggttaaagcgttaaaagaagggcgtgaaccatcattagaagaattgacg
caacaacaagcggatattgaattgcgtgtgcctgctttactgcctgatgattatctagga
gacgtgaatatgcgtttatccttttataaacgcattgctgcagcagagagtaaagcagaa
ttagatgaattaaaagttgagttgattgacagatttggattattgcctgatgcaacgaaa
aatttattacaaattacagagttacgtttattggttgagccgttgaacgttgtgcgaatt
gatgctggaacacaaggcggttttattgagttttcagcaaaagcacaagtgaatccagat
aaatttattcaattaattcaaaaagaacctattgtgtatcgatttgatggcccattaaaa
tttaagtttatgaaagatctatccgataacaaagtgcggttagaatttgtggtggatttg
ttaagaacgattgctgcataa
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