Haemophilus influenzae F3031 (nontypeable): HIBPF_06420
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Entry
HIBPF_06420 CDS
T01395
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hif
Haemophilus influenzae F3031 (nontypeable)
Pathway
hif03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HIBPF_06420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hif03400
]
HIBPF_06420
Enzymes [BR:
hif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HIBPF_06420
DNA repair and recombination proteins [BR:
hif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HIBPF_06420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
SecA_DEAD
DUF6007
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CBY80811
LinkDB
All DBs
Position
590738..594178
Genome browser
AA seq
1146 aa
AA seq
DB search
MKTAFFQPDIPTQPNDHKILGNVLPSADALAISEIAEQNQNLTVVVTPDTRSAVRLSRVL
SELSSQNVCLFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCP
PQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSAVP
FRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEFPTDDKGIEFFRAQFRETFGEIR
RDPEHIYQQVSKGTLISGIEYWQPLFFAEMATLFDYLPEQTLFVDMENNQTQGERFYQDA
KQRYEQRKVDPMRPLLSPEKLWLNVDEVNRRLKSYPRITFKAEKVRSSVRQKNLPVAALP
EVTIQSQQKEPLGQLRQFIEHFKGNLLFSVETEGRRETLLDLLSPLKLKPKQIQSLEQIE
NEKFSLLVSSLEQGFIIEKSLPVAIIGEANLLGERIQQRSRDKRKTINPDTLVRNLAELK
IGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSDE
SAPLHKLGNEAWAKSCQKAAEKIRDVAAELLDVYAQREAKKGFAFKYDREEFQQFAATFP
FEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPT
TLLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDV
KFNDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIST
PPARRLSIKTFVRQNDDLVVREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARV
IVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGEL
LGNEQSGQIENIGFSLYMELLDAAVKALKEGREPSLEELTQQQADIELRVPALLPDDYLG
DVNMRLSFYKRIAAAEGKAELDELKVELIDRFGLLPDATKNLLQITELRLLVEPLNVVRI
DAGTQGGFIEFSAKAQVNPDKFIQLIQKEPIVYRFDGPFKFKFMKDLSDNKVRLEFVVDL
LRTIAA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacggcttttttccaacctgatattccaacccaacccaatgatcacaaaatttta
ggcaatgtattaccaagcgctgatgcattagcgattagtgaaattgcagagcaaaaccaa
aatttaactgtagtggtgacgccagatacacgaagtgcggtgcgtttatcacgtgtttta
tcggaattaagcagtcaaaatgtatgccttttccctgattgggaaaccttaccttacgat
accttttctccccatcaagaaattatttcctctcgtttaagtgcgcttttccatttacaa
aatgcgaaaaaaggcattttcttattgccgatttcgacattaatgcaacgcctttgcccg
ccacaatatttacaacacaatgtgcttttgattaaaaaaggcgatcgtttggtcatcgat
aaaatgcgcttacaattagaagcagcgggctatcgtgcggtggagcaagtattagaacat
ggtgaatacgccgttcgtggagccttgttggatcttttcccaatgggaagtgcggtgcct
tttcgcctcgatttttttgatgatgaaattgattccattcgtacttttgatgtggatacg
caacgtactcttgatgaaattaactcaattaatcttttgccggctcacgaatttccaacg
gatgataaagggattgaatttttccgtgcgcaatttcgtgaaacctttggtgaaattcgc
cgagatcccgaacatatttatcagcaagtcagtaaaggtaccttgatttctggcattgaa
tattggcagccacttttctttgctgaaatggcgactttgtttgattatttgccagaacaa
acgctgtttgtggatatggaaaataatcaaacgcaaggcgagcgtttttatcaagatgcc
aaacagcgttatgaacaacgtaaagtggatcccatgcgtccgcttttatcgcctgaaaaa
ttatggcttaatgtagatgaagtcaatcgccgattgaaatcttatccacgtattacattt
aaagcggaaaaagtgcggtcatcggtacgccagaaaaatttacctgttgccgctctacca
gaagtgactattcaatcccagcaaaaagaaccattgggacaattacgtcaatttattgag
cattttaaaggaaatttattgttttctgtggagacggaaggtcgccgagagactttgctt
gatttgctttcaccgttaaaactcaagccaaaacaaattcaatctttggaacagattgaa
aatgaaaaatttagcttgttagtcagctctcttgaacaaggttttataattgaaaaatcg
cttcctgttgcgattattggcgaagctaatttacttggcgagcgcattcaacaacgttct
agagacaaacgtaaaacaattaatcctgatacgcttgtacgaaatcttgccgaactgaaa
atagggcaaccagttgtgcatcttgatcacggtgtgggacgttatggcggtttggtcacc
ttagatacaggcggcattaaagccgaatatttgctactaaattatgcaaatgaatcgaaa
ctttatgtgccagtgacttcattacatttgattagccgttatgttggtggctctgatgaa
agtgcgccattacataaattagggaacgaggcttgggcgaaatcatgccaaaaagcggcg
gagaaaattcgtgatgtggcggcagagttattagatgtttacgcacaacgtgaagcgaag
aaaggctttgcttttaaatatgatcgtgaagaatttcagcaatttgctgcaacctttcct
tttgaagaaacctacgatcaggaaatggcaattaatgcggtaatttcggatatgtgtcag
ccaaaagcaatggatcgccttgtttgtggtgatgtgggttttggtaaaactgaagtggca
atgcgcgctgcctttttggctgtgatgaatcataagcaagtagcagtgctagtgccaacc
acactgttagcccaacagcattatgagaattttaaagatcgttttgcgaatttgcctgtg
aatgtcgaagtgttatcgcgtttcaaaactgcaaaagaacaaaaacaaattctggaaaac
cttgcagaaggaaaagtcgatatattaattggtacccataaattaattcaatcagatgta
aaatttaacgatcttggattgttgattattgatgaagaacatcgttttggtgtagggcaa
aaagagaaaatcaaacagcttcgtgcgaatatcgatattcttacgctaacggcaacgcca
attcctcgaacgcttaatatggcgatgaatggcattcgtgatctttccattatttccaca
cctcctgctcgccgattaagtattaaaaccttcgtccgtcagaatgacgatcttgttgta
cgagaagcgattttgcgtgaaattctccgaggtgggcaggtttattatctccacaatgat
gtcgcgagcattgaaaatacagcagaaaaactgaccgcacttgtgccagaagcacgagtg
attgtcgggcatggacaaatgagagaacgtgagttagaacgtgtgatgagtgatttttat
catcagcgttataacgtcttagtttgttcaaccattatcgaaacgggtattgatgtacca
acggcaaataccattattattgaacgagcggatcattttggtttggctcagttgcatcaa
ttacgtggacgagtcggacgttcacatcatcaggcttatgcttatttgcttacgccaccg
ccaaagatgatgacaaaagatgctgaacgccgtctagatgcgttggaaaatcttgataat
cttggggctggttttatcttggcaacccacgatttagagattcgtggtgccggcgaatta
cttggaaacgaacaaagtggacaaattgaaaacatcggtttttcgctttatatggaatta
ttggatgcagcggttaaagcgttaaaagaagggcgtgaaccatcattagaagaattgacg
caacaacaagcggatattgaattgcgcgtgccagctttattgcctgatgattatctaggc
gacgtgaatatgcgtttatccttttataaacgcattgctgcagcagagggtaaagcagaa
ttagatgaattaaaagttgagttgattgacagatttggattattgcctgatgcaacgaaa
aatttattacaaattacagagttgcgtttattggttgagccgttgaacgttgtgcgaatt
gatgctggaacacaaggcggttttattgagttttcagcaaaagcacaagtgaatccagat
aaatttattcaattaattcaaaaagaacctattgtgtatcgatttgatggcccattcaaa
tttaagtttatgaaagatttatctgataacaaagtgcggttagaatttgtggtggatttg
ttaagaacgattgctgcataa
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