Haemophilus influenzae F3031 (nontypeable): HIBPF_19220
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Entry
HIBPF_19220 CDS
T01395
Name
(GenBank) ribonuclease E, RNA-binding protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hif
Haemophilus influenzae F3031 (nontypeable)
Pathway
hif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HIBPF_19220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hif03019
]
HIBPF_19220
03009 Ribosome biogenesis [BR:
hif03009
]
HIBPF_19220
Enzymes [BR:
hif01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HIBPF_19220
Messenger RNA biogenesis [BR:
hif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HIBPF_19220
Ribosome biogenesis [BR:
hif03009
]
Prokaryotic type
rRNA processing factors
HIBPF_19220
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
CBY81956
LinkDB
All DBs
Position
complement(1839458..1842256)
Genome browser
AA seq
932 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLA
GSYLVFMPNNPRAGGISRRIEGDERTELKEALSSLDVPDGVGLIVRTAGVGKSPEELQWD
LKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEH
IKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDI
NSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIR
DAVRPDRARIQISRISHFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSIL
RLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFS
VFRLRDGEEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAAVALSISEA
APTPVERKSNESSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRPSRRP
RSENNEIKRTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFETKEERTEPVTQRRQ
RRDLRKRVRVEDNETVVENNFSTTEKMPEVDVITVQNNDEKPVHQNQRSERQERQRRTPR
HLRAANNQRRRRNQEPKSPMPLFAAVVSPELASGKAWIDYSTVNLPKENHFLSVDELLEQ
EKTKKGFITPAMGIVVEEKSPDVKPALDFITQPANESVQKKVQESLDRLSSYKPQEVVES
IDPAINVDEPETLEKVSKFVRTYEFNGRLGTISSVPHTKAEMTLAKANDEMPEAFPIRAW
QDSRYYFYGTGAAGHHCAISHVYSEPTRAKSE
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaatgcaactcaaaaagaagagttgcgtgttgcgcttgtcgatggacaacgc
ctttttgacttggacattgaaagtctgggacacgaacaaaaaaaagcgaatatctacaaa
ggaaaaattactcgcgttgagccaagcttagaagcggcttttgtagattatggtgcagaa
cgtcacggttttttacctttaaaagaaattgcccgtgaatattttcctgatgattatgtt
tttcaaggtcgtccgaatattcgcgatattttgactgaaggacaggaagttatcgttcaa
gttaataaagaagaaagaggaaacaaaggtgcagccttaactacttttgtttctcttgct
ggtagttatttggtgtttatgccgaataatccacgggcaggaggaatttctcgccgtatt
gagggcgatgaacgtactgaactaaaagaggcattaagttcattagatgtgcctgacggt
gtaggcttaatcgtccgtactgctggtgtgggaaaatcgccagaagaattacaatgggat
ttaaaagtattattacatcattgggaagcgatcaaacaagcttcacaaagtcgtccagct
ccatttttaattcatcaagaaagcgatgtgattgtacgcgctattcgcgattatttgcgt
cgtgatattggtgagatcctgattgatagcccaaaaatttttgagaaagcgaaagagcat
atcaaacttgtgcgtcctgatttcatcaatcgcgtgaaactttatcaaggcgaagtacca
cttttcagtcactatcaaattgaatctcaaatcgaatccgcattccaacgtgaagtgcgt
ttaccttctggcggttcaatcgttattgatgtaactgaagcattaaccgctattgatatt
aactccgcacgttctactcgtggtggcgatattgaagaaacggcattaaataccaatctt
gaagcggcagatgaaatcgcgcgtcaattacgcttacgtgacttaggtggattagttgtc
attgatttcattgatatgacaccaattcgccatcaacgtgaagtagaaaatcgtattcgt
gatgcggttcgtccagatcgcgcccgtattcaaattagccgaatttctcattttggtttg
ttagaaatgtcacgtcagcgtttaagcccatcattgggcgaatcttcgcaccatatttgc
cctcgttgtcaaggaacaggcaaagtacgtgataatgaatctctttctttatctattttg
cgtttgctggaagaagaagcattaaaagaaaacaccaagcaagtgcataccattgtgcca
gtacaaattgcctcttatcttcttaacgaaaaacgcaaagcaatcagtaatattgaaaag
cgtcataatgtcgatattattgttgccccaaatgaagcaatggaaacaccgcactttagt
gttttccgtttacgtgatggcgaagaagtaaatgaattaagctataacttagcgaaaatt
cactgcgctcaagatgaaaatactgaagaatcactgctttctcgtaatgtggaaacaaca
gctgttattgaacaaccggcggttgaaagtgcagcagttgcgctttctatttcagaagca
gccccaacgccagttgagcgtaaatcaaatgaatcctctttgttagctaaaattattgcg
aagattaaaggtttatttgcgactaaatctgaagaaaacaaaccgaaaaataaccgcact
tcgcgcaatcctaatcgtaatcaacgccgttcacaggatcgtcgtccttctcgtcgtcca
cgttctgaaaataacgaaataaaaagaaccgaagaacaggttcgtaatgtccgtgagcgt
aatcaacgccgtccacgccgtaacttagtggaagaaagtatcgctgaaagtgcggtaaat
tctacacctgtttttgagactaaagaagaaagaactgagcctgtaactcaacgccgccaa
cgccgtgatttacgtaaacgcgtgcgcgttgaagataatgaaacagttgttgaaaataac
ttcagcacgactgaaaaaatgccagaagtggatgtaattacggttcaaaataatgatgaa
aaacccgttcatcagaaccaacgttctgaacgtcaagagcgtcagcgtcgtactccacgt
catttacgtgcagcgaataatcagcgtcgtcgccgtaatcaagagccaaaatcgccaatg
ccattatttgctgcggtggtttcgcctgaattggcaagtggcaaggcttggattgattat
tcaacggtaaatctgccaaaagaaaatcatttcttatctgtggatgaattgcttgagcaa
gagaaaactaaaaaagggtttatcacgccagcaatgggaattgtcgttgaagaaaaatcc
cctgatgtaaaacctgcattagattttattactcaaccagctaatgaatcggtacagaaa
aaagtacaagaatctttagatcgtttaagttcatataaacctcaagaagttgttgaatct
attgatccagcaattaatgtagatgaacctgaaacgcttgagaaagtatcaaaatttgtc
cgcacttatgaatttaatggacgtttaggtacaatttcttcagtgccccatacaaaagcg
gagatgactttagcgaaagcaaatgatgaaatgccagaggctttcccaattagggcttgg
caggattctcgttattatttctatggaacaggcgcggcaggacatcattgtgcaattagc
cacgtttattctgaaccaacccgcgcaaaatcagaataa
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