Haemophilus influenzae KR494 (serotype f): HifGL_000962
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Entry
HifGL_000962 CDS
T02839
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hik
Haemophilus influenzae KR494 (serotype f)
Pathway
hik03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HifGL_000962 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hik03400
]
HifGL_000962 (mfd)
Enzymes [BR:
hik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HifGL_000962 (mfd)
DNA repair and recombination proteins [BR:
hik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HifGL_000962 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
SecA_DEAD
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
AGV11783
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All DBs
Position
971961..975443
Genome browser
AA seq
1160 aa
AA seq
DB search
MRQFLYKIDALFIFMKTAFFQPDIPTQPNDHKILGNVLQGADALAISEIAEQNQNLTVVV
TPDTRSAVRLSRVLSELSSQNVCVFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGI
FLLPISTLMQRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVR
GALLDLFPMGSAVPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEFPTDDKGIE
FFRAQFRETFGEIRRDPEHIYQQISKGTLISGIEYWQPLFFSEMATLFDYLPEQTLFVDM
ENNQTQGERFYQDAKQRYEQRKVDPMRPLLSPEKLWLNVDKVNRRLKSYPRITFKAEKVR
SSVRQKNLPVAALPEVTIQSQQKEPLGQLRQFIEHFKGNILFSVETEGRRETLLDLLSAL
KLKPKQIQSLEQAKNEKFSLLVSSLEQGFIIEQSFPVAIIGEANLLGERVQQRSRDKRKT
INPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVT
SLHLISRYVGGSDESAPLHKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFK
YDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFL
AVMNHKQVAVLVPTTLLAQQHDENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKV
DILIGTHKLIQSDVKFSDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLN
MAMNGIRDLSIISTPPARRLSIKTFVRQNDDLVVREAILREILRGGQVYYLHNDVASIEN
TAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTII
IERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFI
LATHDLEIRGAGELLGNEQSGQIESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADI
ELRVPALLPDDYLGDVNMRLSFYKRIAAAESKAELDELKVELIDRFGLLPDATKNLLQIA
ELRLLVEPLKVVRIDAGTQGGFIEFSAKAQVNPDKFIQLIQKEPIVYRFDGPLKFKFMKD
LSDNKVRLEFVVDLLRTIAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcaatttttatacaagattgacgcattatttatatttatgaaaacggcttttttc
caacctgatattccaacccaacctaatgatcataaaattttaggcaatgtcttacaaggt
gctgatgcactggcgattagtgaaattgcagagcaaaatcaaaatttaactgtagtagtc
acaccagatacacgaagtgcggtacgtttatcgcgtgttttatcggaattaagcagtcaa
aatgtttgcgtattccctgattgggaaaccttaccttatgataccttttctccccatcaa
gaaattatttcctctcgtttaagtgcgcttttccatttacaaaatgcgaaaaaaggcatt
ttcttattgccgatttcgacattaatgcaacgcctttgcccgccacaatatttacaacac
aatgtgcttctgattaaaaaaggcgatcgtttggtcatcgataaaatgcgtttacaatta
gaagccgcgggctatcgtgctgtggagcaagtattagaacacggcgagtatgccgttcgt
ggggctttgttggatcttttcccaatgggaagtgcggtgccttttcgtcttgattttttt
gatgatgaaattgattccattcgcacttttgatgtggatacgcaacgtactcttgatgaa
attaactcaattaatcttttgccagcgcacgaatttccaacggatgataaagggattgaa
tttttccgtgcacaatttcgtgaaacctttggggagatccgtcgagatcccgaacatatt
tatcagcaaatcagtaaaggtaccttgatttctggcattgaatattggcagccacttttc
ttttctgaaatggcgacgttgtttgattatttgccagaacaaacgctgtttgtggatatg
gaaaataaccaaacgcaaggcgagcgtttttatcaagatgccaaacagcgttatgaacaa
cgtaaagtggatccaatgcgtccgcttttatcgcctgaaaaattatggctcaatgttgat
aaagttaatcgccgattgaaatcttatccacgtattacatttaaagcggaaaaagtgcgg
tcatcggtacgccagaaaaatttacctgttgccgctttaccagaagtgactattcaatcc
cagcaaaaagaaccattggggcaattacgccaatttattgagcattttaaaggaaatata
ctcttttctgtggagacagaaggtcgccgagagacgttgcttgatttactttcagcgtta
aaacttaaaccaaaacaaattcaatccttggaacaggctaagaatgaaaaatttagcttg
ttagtcagctctcttgaacaaggttttattattgaacaatcgtttcctgttgcgattatt
ggcgaagctaatttacttggcgaacgtgttcaacaacgttctagagataaacgtaaaacg
attaatcctgacacgcttgtacgcaatcttgccgagttgaaaatagggcaaccagttgtg
catcttgatcacggtgtggggcgttatggtggtttggtcaccttagatacaggcggcatt
aaagcagaatatttgctgttaaattatgccaatgaatcaaaactttatgtcccagtgact
tcattacatttgattagccgttatgtgggtggttctgatgaaagtgcgccattacataaa
ctgggtaacgaggcttgggcgaaatcacgtcaaaaagcagcggagaaaattcgtgatgtg
gcggccgagttattagatgtttacgctcaacgtgaagcgaagaaaggctttgcctttaaa
tatgatcgtgaagaatttcaacaatttgctgcaacctttccttttgaagaaacttacgat
caggaaatggcaattaatgcggtaatttctgatatgtgtcagccaaaagcaatggatcgc
cttgtttgcggtgatgtgggttttggtaaaactgaagtggcaatgcgtgctgcctttttg
gctgtgatgaatcataaacaagtagcagtgctagtgccaaccacattgttagcccaacag
catgatgagaattttaaagatcgttttgcgaacttgcctgtgaacgtagaagtgttatcg
cgtttcaaaactgcaaaagaacaaaaacaaattctggaaaaccttgcagaaggcaaagtc
gatatattgattggtacccataaattaattcaatcagatgtcaaatttagcgatcttggt
ttgttgattattgatgaagagcaccgttttggtgtagggcaaaaagagaaaatcaaacag
ctccgtgcgaatatcgatattcttacgctaacggcaacgccaattccgcgtacgctaaat
atggcgatgaatggtattcgtgatctgtccattatttccacacctcctgctcgccgatta
agtattaaaaccttcgtccgccagaatgatgatcttgttgtacgagaagcgattttgcgt
gaaatcttgcgtggcggacaggtttattacctccataatgatgtcgcaagtattgaaaat
acagcagaaaaactcaccgcacttgtgccagaagcgcgagtgattgtggggcatggacaa
atgcgcgaacgtgaattagagcgtgtgatgagtgatttttatcatcagcgttataacgtc
ttagtttgttcaaccattatcgaaacgggtattgatgtaccaacggcaaataccattatt
attgaacgagcggatcattttggcttggctcagcttcatcaattacgtggacgagtaggg
cgttcacatcatcaggcttatgcttatttgcttacgccaccgccaaaaatgatgacaaaa
gatgctgaacgccgtcttgatgcattggaaaatcttgataatcttggggctggttttatc
ttggcaacccacgatttagagattcgtggtgcaggcgaattactcggaaatgaacaaagc
ggacaaattgaaagcatcggtttttcgctttatatggaattattggatgcggcggttaaa
gcgttaaaagaagggcgagaaccatccttagaagaactgacgcaacaacaagcggatatt
gaattgcgcgttcctgctttactgcctgatgattatctaggagacgtgaatatgcgttta
tccttttataaacgcattgccgccgcagagagtaaagcagaattagatgaattaaaagtc
gagttgattgacagatttggattattgcctgatgcaacgaaaaacttattacaaattgca
gagttgcgtttattggttgagccgttaaaagttgtgcgaattgatgctggaacacaaggc
ggttttattgagttttcagcaaaagcacaagtgaatccagataaatttattcaattaatt
caaaaagaacctattgtgtatcgatttgatggtccattaaaatttaagtttatgaaagat
ctatccgataacaaagtgcggttagaatttgtggtggatttgttaagaacgattgctgca
taa
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