Haemophilus influenzae KR494 (serotype f): HifGL_001123
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Entry
HifGL_001123 CDS
T02839
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hik
Haemophilus influenzae KR494 (serotype f)
Pathway
hik03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HifGL_001123 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hik03400
]
HifGL_001123 (sbcB)
Enzymes [BR:
hik01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HifGL_001123 (sbcB)
DNA repair and recombination proteins [BR:
hik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HifGL_001123 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HifGL_001123 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HifGL_001123 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AGV11936
LinkDB
All DBs
Position
1138230..1139651
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AA seq
473 aa
AA seq
DB search
MAKDFSFFIYDYESFGVNPAIDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAV
MVTGITPQECNEKGLSEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPY
EYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAM
ADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMAPLVHVSGMLGNYRGNCT
WVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRANLYTKKSELEERSVPPVPLKLVH
INKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVTDIFNEERQFASNDN
VETELYNGFFSNADKNNMSILRSLPAEKLSEHGLAFEDKRIPELLFHYRARHFYKTLTRA
EQIKWQKYRQNKLEKSAVDFESSLQRLAEEHSDNPEKLSLLQQVYEYGTKLLG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagatttcagcttttttatttacgattatgaaagttttggtgtaaatcctgca
atagatcgtcctgcgcaatttgcgggtattcgtacggatgctgattttaatatcattggt
aaaccaataatgttttattgtaaacaaaccaacgattatttaccggctcctgaagccgta
atggtaacaggaattacgccacaagaatgtaatgaaaaggggctttcagagcctgaattt
gccgcaaaaattctagctgagttttcccaacccaatacttgtgtcatgggctataacaat
attcgctacgatgatgaaatgacgcgttatacgttttatcgtaattttattgatccttac
gaatacagctggaaaaacgggaattctcgctgggatttgttagatttagtgcgagcttgt
tatgccttgcgtccagaagggattaattgggcttatgacgatgatggaatgccaagtttc
cgcttagaaaaactcactaaagcaaatggtattgagcatgaaaatgctcatgatgcaatg
gcggatgtatatgcaactattgctatggcgaaattaattaaagaaaaacagcctaaatta
ttccaatatttctttgaaaatcgcggtaaaaaagaaatcgaaaaattggttgatacagga
gcaatggcacctttagtacatgtttctgggatgttagggaattatcgtggaaattgcact
tgggttgcccctttagcttggcatccgacaaatcaaaatgcacttattgtttgtgattta
actggcgatatcgataatttattagccaaaagtgcggatgaattacgggcgaatttatat
acaaaaaaatcagaattagaagaaaggagcgttccacctgttccattaaaactcgtacat
attaataaatgccctattttagcgccagccaaaaccttgttgccagaaacagcaaatcgc
ttgggtattgatcgtcaattatgcttggataatcttgcaaaattacgagcatcttttgat
attcgtgaaaaagtgacggatatttttaatgaagaacgtcaatttgcatcgaatgataat
gtagaaactgagctatataatggctttttcagcaatgctgataaaaataatatgtctatt
ttacgtagtttacctgcagaaaaattatctgaacatggtttagcttttgaagataaacgt
atccctgaattattgttccattatcgagctcgccatttttataaaacccttacacgcgct
gaacaaattaaatggcagaaatatagacagaataaacttgaaaaaagtgcggtagatttt
gaatcaagtttacaacgtttagcagaggaacattcagataatcctgaaaaactatctttg
ttacaacaagtatatgaatatggtacaaaactactaggttag
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