Haemophilus influenzae KR494 (serotype f): HifGL_001627
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Entry
HifGL_001627 CDS
T02839
Symbol
rnr
Name
(GenBank) 23S rRNA (guanosine-2'-O-)-methyltransferase
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hik
Haemophilus influenzae KR494 (serotype f)
Pathway
hik03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HifGL_001627 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hik03019
]
HifGL_001627 (rnr)
03016 Transfer RNA biogenesis [BR:
hik03016
]
HifGL_001627 (rnr)
Enzymes [BR:
hik01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HifGL_001627 (rnr)
Messenger RNA biogenesis [BR:
hik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HifGL_001627 (rnr)
Transfer RNA biogenesis [BR:
hik03016
]
Prokaryotic type
tRNA degradation factors
HifGL_001627 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNA_pol_Rbc25
Vps27_GAT-like
Rpn9_C
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AGV12412
LinkDB
All DBs
Position
1678229..1680577
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AA seq
782 aa
AA seq
DB search
MTKKRKNLINQDPHYKRELEKYGNPIPSREFILSVIRDNNAPMNRDEILTALSIRNEDQI
EAMRRRLRAMENDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDGKKDDLFIPN
HQMQRVMHGDFVLAQPAGLDRRGRREVRIVRVLESRKKQIVGRFFLENGFSYVVPDDSRI
GRDILVPNEHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHD
IPHKFPSAVEKYVKKFTEEVPEEAKKGRVDLRHLPLVTIDGEDARDFDDAVYCEKHGKGW
KLWVAIADVSYYVRLRSALDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCM
VCEMQISAKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYQGLIPHLEELHHL
YKALLNARKQRGAIDFETIETKFIFNAMGRIERIEPVVRNDAHKIIEECMILANIAAANF
MEKHKEPALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHE
LIQTMLLRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGVK
RKTTDTGGYHYSFDEMDLLGNHCSMTERRADDATSEVADWLKCEYMQDHIGEEFSGVISS
VTGFGLFIRLDDLFIDGLVHISTLENDYYQFDATKQRLIGENSGMQYRLGDKVRIKVEAV
HLENKMVDFSLMGSERKPRHAGKTAKEKAKKVFKELPSKTSQKRKSAVKKKEVSKKTSRK
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaacgtaaaaacttaatcaaccaagatcctcattacaaacgagaattggaa
aaatacggcaatccaatcccgagccgtgaatttattttaagcgttattcgagacaataat
gcgccaatgaatcgggatgaaattttgaccgcactttccattcgaaatgaagatcaaata
gaagcgatgcgtcgccgattacgcgcgatggaaaatgatgggcaattagtgttcactaaa
cgtaaacgctatgccttaccagaaaaattagatttatttaaaggtacggtaattggtcat
cgcgaaggttttggttttttacaggtcgatggcaaaaaagatgatttattcattccgaac
catcaaatgcaaagagtcatgcatggagattttgtcttagcgcaacctgctggattagat
cgtcgtggtcgccgtgaagtgcgaattgtgcgcgtattagaaagccgtaaaaaacaaatt
gtgggtcgctttttcttagaaaacggtttcagctatgtggtgcctgatgacagcagaatt
ggtcgtgatattctcgtgccaaatgaacatcgtaatggcgcacgaatggggcaagttgtg
gttgtcgaattgcaagaacgctctgctagttttaaccagccaattggcgtaattactgaa
atcctaggcgataatatggcgaaaggaatggaagtggaaatcgccttgcgtaaccacgat
attccccataagtttccaagtgcggtggaaaaatacgtaaaaaaattcactgaagaagtc
ccagaagaagccaaaaaaggtcgtgtggatttacgtcatttaccgcttgttaccattgat
ggcgaagatgcgcgggattttgatgatgctgtttattgtgaaaaacatggcaaaggctgg
aaactttgggtagcgattgcggatgtcagttattacgtacgtttacgttccgctttggat
gtagaagcgcataatcgtggtaactcagtttattttccgaaccgagttgtaccaatgcta
cctgaaattttatcgaacggcttatgctctcttaacccacaagtggatcgtttatgtatg
gtgtgtgagatgcaaatttcagctaaaggtaagctcacagattatcgcttttatgaagcg
gtgatgaattctcacgcccgcctcacttataccaaagtagccaaaatgcttgaaggcgat
gaagaattacgcactcgttatcaaggacttattccacatttagaagaattgcatcatctc
tataaagcattacttaatgcccgaaaacaacgtggtgccatcgattttgaaaccattgaa
actaagtttatttttaatgcaatggggagaattgagcgtattgaacccgttgttcgtaac
gatgcccacaaaatcattgaggaatgtatgattcttgcgaatatcgcagctgctaatttt
atggaaaaacataaagagcctgcgttatatcgcattcatgccaccccgagcgaagaaaaa
ttaacatcgttccgcactttcttaagtgagtttggtttaactttagaaggtggcttaaaa
ccaaccacaaaagactatgctgctctcttagaaaaagttaaggaacgacctgatcatgaa
cttattcaaacaatgttgctccgctctttaagccaagctgtctatcatgctgacaatatt
ggacactttggtttggctttggaagagtatgcacactttacttcgccaattcgccgttat
ccagacttaacacttcatcgaggcatcaaatatttactcgctaaagaacaaggcgtaaaa
cgtaaaacaacggatactggcggttatcattactcttttgatgaaatggatttacttggc
aatcattgttcaatgacggaacgccgtgctgacgacgccactagtgaagtggcagattgg
ctaaaatgtgaatatatgcaagatcatattggcgaagaatttagcggtgttatttcatct
gtgacgggatttggtttatttatacgcttagatgatttattcatcgatggtttagtccat
atttcgactttagaaaacgattattaccaattcgatgcaacaaaacagcgtttaattggc
gaaaatagcggaatgcaatatcgcttaggcgataaagttcgcatcaaagttgaagcggta
catttagaaaataaaatggtcgatttctctctgatggggagtgaacgtaagcctcgtcat
gctggaaaaaccgcgaaagaaaaagccaagaaagtctttaaagaactaccgtctaaaaca
tcccagaaacgaaaaagtgcggtaaaaaagaaagaagtttctaagaaaacatctagaaaa
cgaaaataa
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