Haemophilus influenzae F3047 (nontypeable): HICON_12410
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Entry
HICON_12410 CDS
T01400
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hil
Haemophilus influenzae F3047 (nontypeable)
Pathway
hil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HICON_12410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hil03019
]
HICON_12410
03009 Ribosome biogenesis [BR:
hil03009
]
HICON_12410
Enzymes [BR:
hil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HICON_12410
Messenger RNA biogenesis [BR:
hil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HICON_12410
Ribosome biogenesis [BR:
hil03009
]
Prokaryotic type
rRNA helicases
HICON_12410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
SWC7
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
CBY86704
UniProt:
A0AAV2U3D3
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All DBs
Position
complement(1023504..1025345)
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AA seq
613 aa
AA seq
DB search
MTNKITFNNLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFA
LPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRA
LKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENH
QTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLE
VEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVVA
TDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIE
HLMKKGINEVELPNHEVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIA
AAMLMLLQGKQKLILPPDPPMEKRRRERNERGDRRENPRSAERRGERKGYVNPQPMDLYR
IEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTRV
LNKQMQMSFLGAVKSDNSRGSDDFNGKCKGRGGDFRGERGRERGNDNRGNRKFNEKSNRT
FSDKPRRDRRSSF
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgactaacaaaattacttttaataacttaggcttacctgagttcatcttaaaagctgtt
tctgacttaggttttgaaacaccttctccaattcaacaatcttgtatcccgcatttgctc
agtggcaatgatgtgctaggtatggcacaaacgggtagtggtaaaactgctgcctttgca
ctgcctttactcgcgcaaattgatccaagtgaaaaacatccacaaatgttagtgatggca
cctacacgcgaacttgccattcaagttgccgatgcgtgcgaactatttgttaaatatgca
cagggcactcgcattgttaccttatatggtggccaacgttatgacatccaacttcgtgca
ttaaaacaaggcgcacaagtggttgtgggtacaccaggtcgtattcttgaccatattcgt
cgcggaacattaaatctttctgaacttcgttttatcgtattagatgaagccgatgaaatg
ctacgcatgggtttcattgatgatgtagaaaccgtcatggcagaattaccagaaaatcat
caaactgcgttattctctgcaacaatgcctgaaccgatccgtcgtattacgaaacgtttt
atgaatgatccacaagaagtgaagatcaaagtgaataacgaaaatgccccagatatcgac
caaagttgttggtatgtacacggcgtgcgtaaaaacgaagctcttcttcgtttcttagaa
gtggaagattttgatgcagcgattatttttgctcgtactaaaactggcacattagacatt
acagaactacttgaaaaaaatggtttccgttctgccgcacttaatggcgatatgacacaa
caattgcgcgaacaaaccctcgatcgcttacgtaaccgcagtttagatattgttgtggca
actgatgtagccgcacgcggtattgatattgaacgtatcagccttgtagtgaactacgac
attccacttgatgcagaatcttatgtacaccgaattggtcgtactggtcgtgcaggtcgt
tctggtcgtgctttattattcgttgaacctcgcgagcgtcgtttactgcgcaatattgaa
cacctaatgaaaaaaggtatcaatgaagttgaattgccaaatcacgaagtgttacaagaa
tgccgccgtaaaaaattcgtcgcaaaaattacgaaacaactagaacatcacgatttagaa
caatatcgtagtttattagaagacttattcacagccgatcaggatcaagaaaatattgcg
gctgcaatgttaatgttgctacaaggcaaacaaaaattaattcttccacctgatccgcca
atggaaaaacgtcgtcgtgaacgtaatgaacgaggtgatcgccgtgaaaatccacgttca
gctgaacgtcgtggcgaacgtaaaggctacgtaaatccacaaccaatggatttatatcgt
attgaagtcggtcgtgcggatggtgtagaagttcgccatatcgttggtgcgattgctaat
gaaggtgatatcaatagtcgctatattggtcatatcaaactttatgatgactacactacc
gttgaattgccacaaggtatgccgaaagaattattgcaacaattcggaaaaacacgcgta
ttgaataaacaaatgcaaatgtctttcttaggtgcagtaaaatccgataattcccgtggc
agcgatgattttaacggtaaatgtaaaggtcgtggtggcgatttccgtggagagcgcgga
cgtgaacgcggcaatgataatcgtggaaatcgtaaatttaatgaaaaaagtaaccgcact
tttagcgacaaaccacgccgtgatcgtagatcatcattctaa
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