Haemophilus influenzae Rd KW20 (serotype d): HI_0231
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Entry
HI_0231 CDS
T00001
Name
(GenBank) ATP-dependent RNA helicase (deaD)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hin
Haemophilus influenzae Rd KW20 (serotype d)
Pathway
hin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HI_0231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hin03019
]
HI_0231
03009 Ribosome biogenesis [BR:
hin03009
]
HI_0231
Enzymes [BR:
hin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HI_0231
Messenger RNA biogenesis [BR:
hin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HI_0231
Ribosome biogenesis [BR:
hin03009
]
Prokaryotic type
rRNA helicases
HI_0231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAC21900
UniProt:
P44586
LinkDB
All DBs
Position
261572..263413
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AA seq
613 aa
AA seq
DB search
MTDKITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFA
LPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRA
LKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENH
QTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLE
VEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVA
TDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIE
HLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIA
AAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLYR
IEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFAKTRV
LNKQMQMSFLGAVKSDNSRGSDDFNGKRKGRGGDFRGERGRERGNDNRGNRKFNEKSNRT
FSDKPRRDRRSSF
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaaaattactttcaatgacttaggcttacctgagttcatcttaaaagctgtt
tctgacttaggttttgaaacaccttctccaattcaacaatcttgtatcccgcatttgctc
aatggcaatgatgtgctaggtatggcacaaacaggtagtggtaaaaccgctgcctttgca
ctgcctttactcgcgcaaattgatccaagtgaaaaacatccacaaatgttagtaatggca
cctacacgcgaacttgctattcaagttgccgatgcgtgcgaactatttgttaaatatgca
cagggcactcgcattgttaccttatatggtggccaacgttatgacatccaacttcgtgca
ttaaaacaaggcgcacaagtggttgtgggtacaccaggccgtattcttgaccatattcgt
cgcggaacattaaatctttctgaacttcgttttatcgtattagatgaagccgatgaaatg
ctacgcatgggtttcattgatgatgtagaaaccgtcatggcagaattaccagaaaatcat
caaactgcgttattctctgcaacaatgcctgaaccgatccgtcgtattacgaaacgtttt
atgaatgatccacaagaagtgaagatcaaagtgaataacgaaaatgccccagatatcgac
caaagttgttggtatgtacacggcgtgcgtaaaaacgaagcccttcttcgtttcttagaa
gtggaagattttgatgcagcgattatctttgctcgcactaaaactggtactttagacatt
acagaactacttgaaaaaaatggtttccgttctgccgcacttaatggtgatatgacacaa
caattacgcgaacaaaccctcgatcgcttacgtaacggcagtttagatattgttgtggca
accgatgtggctgcacgcggtattgatattgaacgtatcagccttgtggtgaactacgac
attccgcttgatgcagaatcttatgtacaccgaattgggcgtactggtcgtgcaggtcgt
tctggccgtgctttattatttgttgaacctcgcgagcgtcgtttacttcgtaatattgaa
cacctaatgaaaaaaggtatcaatgaagtagaattgccaaatcatcttgtgttacaagaa
tgccgccgcaaaaaatttgtcgccaaaattacgaaacaactcgagcatcacgatttagaa
caatatcgtagtttattagaagacttattcacagccgatcaggatcaagaaaatattgct
gcagcaatgttgatgctgcttcaaggcaaacaaaaactcattcttccacctgatccacca
atggaaaaacgtcgtcgtgaacgtaatgatcgcggtgatcgccgtgaaaatccacgttca
gctgaacgtcgtggcgaacgtaaaggctatggaaatccacaaccaatggatttatatcgt
atcgaagtcggtcgtgcagatggtgtagaagttcgccatatcgttggtgcgattgctaac
gaaggcgatattaacagccgttatattggtcatattaaactttatgatgattacactacc
gttgaattgccacaaggtatgccgaaagaattattgcaacaattcgctaaaacacgcgta
ttgaataaacaaatgcaaatgtctttcttaggtgcagtaaaatccgataattcccgtggc
agcgatgattttaacggtaaacgtaaaggtcgtggtggcgatttccgtggagagcgcgga
cgtgaacgcggcaatgataatcgtggaaatcgtaaatttaatgaaaaaagtaaccgcact
tttagcgacaaaccacgccgtgatcgtagatcatcattctaa
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