Haemophilus influenzae Rd KW20 (serotype d): HI_0413
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Entry
HI_0413 CDS
T00001
Name
(GenBank) ribonuclease E (rne)
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hin
Haemophilus influenzae Rd KW20 (serotype d)
Pathway
hin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HI_0413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hin03019
]
HI_0413
03009 Ribosome biogenesis [BR:
hin03009
]
HI_0413
Enzymes [BR:
hin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HI_0413
Messenger RNA biogenesis [BR:
hin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HI_0413
Ribosome biogenesis [BR:
hin03009
]
Prokaryotic type
rRNA processing factors
HI_0413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AAC22072
UniProt:
P44443
LinkDB
All DBs
Position
434137..436992
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AA seq
951 aa
AA seq
DB search
MRFILRFFKYLIRELTMKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKG
KITRVEPSLEAAFVDYGAERHGFLPLKEIAREYFPDDYVFQGRPNIRDILVEGQEVIVQV
NKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSSLDVPDGV
GLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRR
DIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRL
PSGGSIVIDVTEALTAIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVI
DFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICP
RCQGTGKVRDNESLSLSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKR
HNVDIIVAPNEAMETPHFSVFRLRDGEEVNELSYNLAKIHCAQDENTEESLLSRNVETTA
VIEQPAVESAVVALSISEAAPTPVERKSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTS
RNPNRNQRRSQDRRSSRRPRSENNETERTEEQVRNVRERNQRRPRRNLVEESIAESAVNS
TPVFEAKEERTEPVTQRRQRRDLRKRVRVEDNETVVENNFSTTEKMPEVDVITVQNNDEK
PVHQNQRSERQERQRRTPRHLRAANNQRRRRDQEPKSPMPLFAAVVSPELASGKAWIDYS
TVNLPKENHFLSVDELLEQEKTKKGFITPAMGIVVEEKSPDVKPALDFITQPANESVQKK
VQESLDRLSSYKPQEVVESIDPAINVDEPETLEKVSKFVRTYEFNGRLGTISSVPHTKAE
MTLAKANDEMPEDFPIRAWQDSRYYFYGKGAAGHHCAISHVYSEPTRTKSE
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
gtgcggtttattttgaggttttttaaatatttaataagagaattgacaatgaaaagaatg
ttaatcaatgcgactcaaaaagaagagttgcgtgttgcgcttgtcgatggacaacgcctt
tttgacttggacattgaaagtccgggacacgaacaaaaaaaagcgaatatctacaaagga
aaaattactcgcgttgagccaagcttagaagcggcttttgtagattatggtgcagaacgt
cacggttttttacctttaaaagaaattgcccgtgaatattttcccgatgattatgttttc
caaggtcgtccgaatatacgcgatattttggttgaaggacaggaagttatcgttcaagtt
aataaagaagaaagaggaaacaaaggtgcagccttaactacttttgtttctcttgctggc
agttatttggtacttatgccgaataatccacgggcaggaggaatttctcgccgtattgaa
ggcgatgaacgtactgaactaaaagaagcattaagttcattagatgtgcctgacggtgta
ggcttaatcgtccgtactgctggtgtgggaaaatcgccagaagaattacaatgggattta
aaagtattattacatcattgggaagcgatcaaacaagcttcacaaagccgtccagctcca
ttcttaattcatcaagaaagcgatgtgattgtacgtgctattcgtgattatttgcgtcgt
gatattggcgagatccttattgatagcccaaaaatttttgagaaagcgaaagaacatatc
aaacttgtgcgtcctgatttcatcaatcgcgtgaaactttatcaaggcgaagtgccactt
ttcagccactatcaaattgaatctcaaattgaatccgcattccaacgtgaagtacgttta
ccttctggcggttcaatcgttattgatgtaactgaagcattaaccgccattgatattaac
tccgcacgttctactcgtggtggcgatattgaagaaaccgcattaaataccaaccttgaa
gcggcagatgaaatcgcgcgtcaattacgcttacgtgacttaggtggattagttgtcatt
gatttcattgatatgacaccaattcgccatcaacgtgaagtagaaaatcgtattcgtgat
gcggttcgtccagatcgtgcccgtattcaaattagccgaatttctcgttttggtttgtta
gaaatgtcacgtcagcgtttaagcccatcattgggcgaatcttcgcaccatatttgccct
cgttgtcaaggaacaggcaaagtgcgtgataatgaatctctttctttatctattttgcgt
ttgctggaagaagaagcattaaaagaaaacaccaagcaagtgcataccattgtgccagta
caaattgcctcttatcttcttaacgaaaaacgcaaagcaatcagtaatattgaaaagcgt
cataatgtcgatattattgttgccccaaatgaagcaatggaaacaccgcactttagtgtt
ttccgtttacgtgatggcgaagaagtaaatgaattaagctataacttagcgaaaattcac
tgcgctcaagatgaaaatactgaagaatcactgctttctcgtaatgtggaaacaacagct
gttattgaacaaccagcggttgaaagtgcagtagttgcactttctatttcagaagcagcc
ccaacgccagttgagcgtaaatcaaatgaaccctctttgttagctaaaattattgcgaaa
attaaaggtttatttgcgactaaatctgaagaaaacaaaccgaaaaataaccgcacttcg
cgcaatcctaatcgtaatcaacgccgttcacaggatcgtcgttcttctcgtcgtccacgt
tctgaaaataacgaaacagaaagaaccgaagaacaggttcgtaatgtccgtgagcgtaat
caacgccgtccgcgccgtaacttagtggaagaaagtatcgctgaaagtgcggtaaattct
acacctgtttttgaggctaaagaagaaagaactgagcctgtaactcaacgccgccaacgc
cgtgatttacgtaaacgcgtgcgcgttgaagataatgaaacagttgttgaaaataacttc
agcacgactgaaaaaatgccagaagtggatgtaattacggttcaaaataatgatgaaaaa
cccgttcatcagaaccaacgttctgaacgtcaagagcgtcagcgtcgtactccacgtcat
ttacgtgcagcgaataatcagcgtcgtcgccgtgatcaagagccaaaatcgccaatgcca
ttatttgctgcggtggtttcgcctgaattggcaagtggcaaggcttggattgattattca
acggtaaatctgccaaaagaaaatcatttcttatctgtggatgaattgcttgagcaagag
aaaactaaaaaagggtttatcacgccagcaatgggaattgttgttgaagaaaaatcccct
gatgtaaaacctgcattagattttattactcaaccagctaatgaatcggtacagaaaaaa
gtacaagaatctttagaccgtttaagttcatataaacctcaagaagttgttgaatctatt
gatcctgcaattaatgtagatgaacctgaaacgctcgagaaagtatcaaaatttgtccgc
acttatgaatttaatggacgtttaggtacaatttcttcagtaccccatacaaaagcggag
atgactttagcgaaagcaaatgatgaaatgccagaggatttcccaattagggcttggcag
gattctcgttattatttctatggaaaaggcgcggcaggacatcattgtgcaattagccac
gtttattctgaaccaacccgcacaaaatcagaataa
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