Haemophilus influenzae Rd KW20 (serotype d): HI_0861
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Entry
HI_0861 CDS
T00001
Name
(GenBank) virulence-associated protein (vacB)
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hin
Haemophilus influenzae Rd KW20 (serotype d)
Pathway
hin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HI_0861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hin03019
]
HI_0861
03016 Transfer RNA biogenesis [BR:
hin03016
]
HI_0861
Enzymes [BR:
hin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HI_0861
Messenger RNA biogenesis [BR:
hin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HI_0861
Transfer RNA biogenesis [BR:
hin03016
]
Prokaryotic type
tRNA degradation factors
HI_0861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNA_pol_Rbc25
Rpn9_C
Vps27_GAT-like
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AAC22520
UniProt:
P44907
LinkDB
All DBs
Position
complement(910379..912727)
Genome browser
AA seq
782 aa
AA seq
DB search
MTKKRKNLINQDPHYKRELEKYGNPIPSREFILTVIRDNNAPMNRDEILTALSIRNEDQI
EAMRRRLRAMENDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDGKKDDLFIPN
HQMQRVMHGDFVLAQPAGLDRRGRREVRIVRVLESRKKQIVGRFFLENGFGYVVPDDSRI
GRDILVPNEHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHD
ILHKFPSAVEKYVKKFTEEVSEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKGW
KLWVAIADVSYYVRLRSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCM
VCEMQISAKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKL
YQALLSARHQRGAIDFETIETKFIFNAMGRIERIEPVVRNDAXKIIEECMXLANIAAANF
MEKHKEPALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHE
LIQTMLLRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAK
RKTTDTGGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISS
VTGFGLFVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAV
HLENKMVDFSLIGSERKPRRAGKTAKEKAKKVFKELPSKASKKRKSAVKKKDVSKKTSRK
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaacgtaaaaacttaataaaccaagatccgcattacaaacgagaattggaa
aaatacggcaatccaatcccgagccgtgaatttattttaaccgttattcgagacaataat
gcaccgatgaatcgggatgaaattttgaccgcactttccattcgaaatgaagatcaaata
gaagcgatgcgtcgccgattacgcgcgatggaaaatgacggacaattagtgttcaccaaa
cgtaaacgctatgccttaccagaaaaattagatttatttaaaggcacggtaattggtcat
cgcgaaggttttggttttttacaggtcgatggcaaaaaggatgatttattcattccgaac
catcaaatgcaaagagtcatgcatggagattttgtcttagcgcaacctgctggattagat
cgtcgtggtcgccgtgaagtgcgaattgtgcgcgtattagaaagccgtaaaaaacaaatt
gtgggtcgttttttcttagaaaacggttttggctatgtggtgcctgatgatagcagaatt
ggtcgagatattctcgtgccaaatgaacatcgtaatggtgcacgtatgggacaagttgtc
gttgtcgaattgcaagaacgttctgccagttttaaccagccaattggcgtaatcactgaa
atcctaggcgataatatggcgaaaggaatggaagtagaaatcgccttgcgtaaccacgat
attctccataagtttccaagtgcggtggaaaaatatgttaaaaaattcactgaagaagtc
tctgaagaagcaaaaaaaggccgtgtggatttacgcaatttaccgcttgtgaccattgat
ggcgaagatgcgcgggattttgatgatgccgtttattgtgaaaaacacggcaaaggctgg
aaactttgggtggcgattgcggatgttagttattacgtacgtttacgttccactttggat
gtagaagcgcataatcgtggtaactcggtctattttccgaaccgagttgtacctatgcta
cccgaaattttatcgaacggcttatgctctcttaacccacaagtggatcgtttgtgtatg
gtgtgtgaaatgcaaatttctgccaaaggtaagctcacagattatcgcttttatgaagca
gtgatgaattctcacgctcgcctcacttataccaaagtagcaaaaatgcttgaaggcgat
gaagaattacgcactcgttattctacgcttgtgcctcatttagaagaactttataaactc
tatcaagctttgcttagtgcgcgtcatcaacgtggtgcgatcgattttgaaaccattgaa
actaagtttatttttaatgcaatggggagaattgagcgtattgaacccgttgttcgcaat
gatgcccakaaaatcattgaggaatgtatgawtcttgcgaatatcgcagcagccaatttt
atggaaaaacataaagagccagcgttatatcgcattcatgccaccccgagcgaagaaaaa
ttaacatcgttccgcactttcttaagtgagtttggtttaactttagaaggcggattaaaa
ccaactacaaaagactatgctgctctcttagaaaaagttaaagaacggcctgatcatgaa
cttattcaaacaatgttgctacgttcattaagtcaagccgtctatcatgctgataatatt
gggcactttggcttggctttggaagaatatgctcactttacttcgccaattcgccgttat
ccagacttaacacttcatcgaggtatcaaatatttactcgctaaagaacaaggcgctaaa
cgtaaaaccaccgatacaggcggttatcattactcttttgatgaaatggatttacttggc
aatcactgttcaatgaccgaacgccgcgctgacgacgcaactcgtgaagtggctgattgg
ctgaaatgtgaatatatgcaagatcatgtcggtggcgaatttagcggtgttatttcatct
gtgacgggatttggtttatttgtacgcttagatgatttattcatcgatggtttagtccat
atttccaccttagaaaacgattattaccaattcgatgcagcaaaacagcgtttaatcggc
gaaaatagcggaatgcaatatcgcttaggcgataaagttcgcatcaaagttgaagcggta
catttagaaaataaaatggtcgatttctcgctaataggtagtgaacgtaagcctcgtcga
gctggaaaaaccgcgaaagaaaaagctaagaaagtttttaaagagctaccgtccaaagcc
tccaaaaaacgaaaaagtgcggtaaaaaagaaagacgtttcgaagaaaacatctagaaaa
cgaaaataa
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