Haemophilus influenzae PittEE (nontypeable): CGSHiEE_06725
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Entry
CGSHiEE_06725 CDS
T00543
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hip
Haemophilus influenzae PittEE (nontypeable)
Brite
KEGG Orthology (KO) [BR:
hip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hip03019
]
CGSHiEE_06725
Enzymes [BR:
hip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CGSHiEE_06725
Messenger RNA biogenesis [BR:
hip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CGSHiEE_06725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
ResIII
AAA_30
HA2_N
NACHT
AAA_25
FtsK_SpoIIIE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ABQ98686
LinkDB
All DBs
Position
1328421..1332335
Genome browser
AA seq
1304 aa
AA seq
DB search
MKNSSVKHTLTPLQQSLFSQLNDIMLVDQRRLSACIHGIGKIKSQEAQQAVADEIQQQIE
QARLRVEQRKSAVQNPIVFPESLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMC
LELGFGNLGMIGHTQPRRIAARSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMT
DGILLAEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDV
ERFSKHFNNAPIIEVSGRTYPVEVRYRPVVEEDDQDQLQGILNAVDELQAEGRGDILIFM
NGEREIRDTAEALQKQNLKHTKILPLFARLSAQEQNKIFHPSGLNRIVLATNVAETSLTV
PGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDF
NSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLLEELGAFET
VQTKSGEKRLLTRVGRQLAQLPVDLRLAKMILSAVNFGCVYEMMIIVSALSIQDPRERPQ
EKQQDSDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLNYLRIREWQ
DIYHQIRLTVREMGLPINSEKAEYQQIHTALLSGLLSHIGLKEAEKQQYLGARNAHFAIF
PNSVLFKKQPKWVMAAELVETSKLWGRMVAEIEPEWIEPLAEHLIKKSYSEPRWSKSRGA
VIADEKVTLYGVPIVAARPVNYGAIDPTVSREIFIQSALVEGGWNTKHKFFKENQRLVRE
VEELEHKSRRRDILVDDRTFFEFYDQRIGTEVVSQKHFDTWWKKAQQKDPELLNFERSFL
INDDAEQVSKLDFPNFWHQGNLKLKLTYQFEPGTDADGVTVHIPLPLLNQVEMTGFDWQI
PGLREELVIALIKSLPKSYRRNFVPAPNYAQAFLSRAMPLEKPLLDTLIYELRRMTGVTV
EAEHWNWEQIPSHLKMTFRVVDENGKKIAESMNLDELKFNLKDRVQESISAVADDGIEQS
GLHIWSFADLPQCYEQKQRGFSVKAFPAIVDEKDAVGIKLFETEFEQAVAMQQGLRRLLL
LNVPSPIKYLHEKLPNKAKLGLYFTPFGRVLDLIDDCIACAVDKLITDFGGFVWDEAGFE
KLRDFVRENLNEVTVDIAQKVEQILTLTYQLDQRLKGKMDFTMAFALSDIKSQLAGLVYQ
GFVQKSSYDRLLDLQRYLQAVDKRIDKLAQDVNRDRAAMLRVEQVQQAYQQLLAKLPKSK
PIADEVSEIRYMIEELRVSLFAQQLGTKYQVSDKRILGIIGNVN
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacagctcggtaaaacacacattaactcccttacaacaatctcttttttctcaa
ttaaatgacatcatgctggtggatcaacgtcgcttatccgcctgcattcatggtattgga
aaaataaaaagccaagaggctcaacaagccgttgcagatgaaatccaacagcaaattgaa
caagctagattacgtgtagaacaacgaaaaagtgcggtacaaaatccgattgtttttcca
gagagtttgcccgttagccaacgcaaagtcgaaattcaaaaactgctttctgaacatcag
gtcatcgtggtagcaggggaaactggttcaggtaaaaccacccaattgccgaaaatgtgt
ttggaattaggtttcggcaatttaggcatgattggtcatacccagccacgccgtattgct
gctcgttcggtggcggcgcgtattgcggaagaactggaaacggagcttggtggtttagtc
ggttataaggttcgttttaacgatcaaatcagtgatgatacacaaatcaaattgatgact
gacgggattctgttagcggaaattcaaaacgatcgttttctcaatcaatattcttgtttg
attatcgatgaagcccacgaacgtagcctaaataacgattttattctcggttatctgaaa
cagttgttgccacgtcgtcgtgatttaaaacttattatcacttctgcaaccattgatgtg
gaacgcttttctaaacactttaacaatgcgccgattattgaagtctcaggcagaacctat
cctgttgaagtacgttatcgtcccgtagtggaagaagacgatcaagatcagctacaaggt
attctgaatgcggtggatgaattgcaagcagaaggtcgaggcgatatcttgatctttatg
aacggtgaacgggaaattcgtgatactgccgaagccttgcaaaaacaaaatctaaaacac
acgaaaattctaccgctctttgctcgattgtctgcgcaagaacaaaataaaattttccat
ccaagcggtttaaatcgcattgtattggcgaccaacgtcgcagaaacctcattgaccgta
cctggtattaagtatgtgattgacccaggtacagcacgaatttcccgttatagctatcgc
accaaagtacaacgtttaccgattgaacctatttcacaggcatccgctaatcagcgtaaa
ggtcgttgtggtcgtgtaagtgaagggatttgtattcgtttatattcggaagaggatttt
aattctcgtccagagtttaccgatcctgaaattctacgcaccaatttagcctccgttatt
ttgcaaatgacggcattgggtttggatgatattgaagcgttcccttttgtagatgcgcca
gataaacggcacattcaagatggcgtgaagttgttggaagagttgggagcgtttgaaact
gttcaaactaaatcgggtgaaaaacgcctattaactagagttggtcgccaactcgctcaa
cttccagtcgatctgcgccttgccaaaatgatcctaagtgcggtcaattttggctgcgtt
tatgaaatgatgatcatcgtctctgcgttatccattcaagatccgcgcgagcgtccacaa
gaaaaacagcaagattctgatgaaaaacatcgtcgttttgccgataaaaaatcagatttc
ttggctttcctcaatctttggcgttatctacaagaacaacaaaaagaatcgagtaaaaac
caattccgtcgtcagtgccaaaaggatttcttaaattatttacgcattcgtgaatggcag
gatatttatcatcaaattcgtttaaccgtgcgtgaaatgggcttaccgattaattctgaa
aaagcagaatatcagcaaattcataccgcacttttaagcggtttgctttctcatatcggt
ttaaaagaagcggagaaacaacaatatcttggcgcacgtaatgcccattttgcaattttc
cccaattctgtgcttttcaaaaaacaaccgaaatgggtgatggcggcagagttagtggaa
acctccaaactttgggggcgcatggtggcagaaatcgagccagaatggattgagccactt
gccgagcatctcattaaaaaatcctattcagaaccgcgttggtcgaaatctcgtggtgcg
gtaattgcagatgaaaaagtcacactttacggtgtgccgattgtggctgcgagaccagtg
aattacggtgctattgatccaacggtaagccgtgagatttttattcaatctgccttggtg
gaagggggttggaataccaagcataaattcttcaaagaaaatcaaaggctcgttcgagaa
gtagaagaattggaacacaaaagccgccgccgcgatattttggtggatgatcgcacattt
tttgaattttacgatcagcgtattggcacagaagttgtctctcaaaaacattttgatacc
tggtggaaaaaggcgcagcaaaaagatcctgaattgcttaattttgaacgttcatttttg
atcaatgatgatgcggaacaagtgagcaagctggatttcccgaatttctggcatcaaggt
aatttaaaactcaaattgacttatcagtttgaaccaggtaccgatgcggacggcgtgaca
gtacatattccattgccattgctcaaccaagtggaaatgacaggctttgactggcaaatt
ccaggcttgcgtgaagagttggtgattgcactgattaaatcgctgccgaaatcttatcgc
cgtaacttcgtacctgcacctaattatgctcaagcttttttaagtcgagccatgccgttg
gaaaagccattattggatacgctgatttatgaattgcgtcgtatgacgggcgttactgta
gaagcggaacattggaattgggagcaaattccaagccatttgaaaatgactttccgtgtg
gtggatgaaaacggtaagaaaattgcggaatccatgaatttggacgagctgaaattcaac
ttaaaagatcgtgtgcaggaaagtatttctgctgtggcagatgatggcattgagcaaagt
gggctgcatatttggagttttgcagatttaccacaatgttacgaacaaaaacaacgtggt
tttagcgtaaaagcgttcccagctattgtggatgaaaaagatgccgtaggtatcaaactg
tttgaaacagagtttgagcaagcagtagcaatgcaacaaggtctgcgccgattgttactg
cttaacgtgccgtcaccaattaaatatctgcatgaaaaattgccgaataaagctaaattg
gggttgtattttaccccgttcggccgtgtcttagatttgattgatgactgtatcgcttgt
gctgtggataaactgattaccgattttggcggctttgtttgggatgaagctggctttgaa
aaattgcgtgattttgtacgagaaaaccttaacgaagtgactgtggatattgcgcagaaa
gtggagcagattctcactctcacttaccaacttgaccaacgccttaaaggcaaaatggat
ttcacgatggcatttgcattatccgacatcaaatcgcaacttgcaggtttggtgtatcaa
ggttttgtgcaaaagagcagttatgatcgcctactggatttacagcgctatctacaagcg
gtagataaacgtattgataaactggctcaagatgtgaatcgcgatcgtgcggcgatgtta
cgggtagaacaagtgcaacaagcctaccagcaactcctcgccaaactgccgaaatccaaa
ccgattgcagatgaggtgtctgagattcgttatatgattgaggaattgcgggtgagttta
tttgcacagcagttagggacgaagtatcaggtgtcggataagcggattttgggaataatt
ggtaatgttaattaa
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