Haemophilus influenzae PittEE (nontypeable): CGSHiEE_08475
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Entry
CGSHiEE_08475 CDS
T00543
Name
(GenBank) prolyl-tRNA synthetase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hip
Haemophilus influenzae PittEE (nontypeable)
Pathway
hip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGSHiEE_08475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hip03019
]
CGSHiEE_08475
03400 DNA repair and recombination proteins [BR:
hip03400
]
CGSHiEE_08475
Enzymes [BR:
hip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGSHiEE_08475
Messenger RNA biogenesis [BR:
hip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGSHiEE_08475
DNA repair and recombination proteins [BR:
hip03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CGSHiEE_08475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HEM4
Motif
Other DBs
NCBI-ProteinID:
ABQ98996
LinkDB
All DBs
Position
complement(1670022..1671869)
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AA seq
615 aa
AA seq
DB search
MQDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCY
QIPALCFDGLTLVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLK
LLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPI
MALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERITESLRNKGVSAAAYHAGMETARRDRVQQDFQRDNVQVVVATIAFG
MGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPE
TPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPCNNCDICLDPPKKYDGLVDAQ
KVMSTIYRVGQCFGAHYVIVVLRGMHNQKIIELQHDKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEELELAMPRISSISKIAHNPQRQGVANYDKD
LFARLRFLRKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGLP
FIKLIQEHKAILANA
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgcaggattctcctttaccatcaaaaataatagaaaaaccgaccgcactttctgttttg
aaatcggtttttggttatcaatctttccgtaaagggcaggaagaagtcattaatgccact
ttaaatggacaagatgcgttggtggtaatggcaacggggaatggtaaatcgctttgttac
caaattcccgcactttgttttgatggtttaacgttagtgatttctccgctgatttccttg
atgaaagatcaagtggatcagctgcaagctaatggaattgaggcggattttcttaattct
agtcagactttagaacagcagcaacaagtacaaaataagcttatttctgggcaacttaaa
ctactttatgtgtcgccagaaaaagtgatgacgaacagtttctttcaacttatttcttat
agcaaagtctgctttattgcgattgatgaagcgcattgtatttctcaatgggggcatgat
tttcgccctgaatatacccagcttggtggtttaaaagccagtttccctgatgcgccgatt
atggcacttacggcaacggcagattatgcgactcaacaagatattctgcggcatcttaat
ctgaaaaatctgcacaaatacattggtagttttgatcgaccaaacattcgttataccttg
gaagaaaaatataaaccaatggagcaattgacacgttttgtgttggctcaaaagggcaag
agtgggattatttattgcaacagtcgaaacaaggttgaacgaattacggaaagtttacgc
aataaaggtgtctctgccgcagcttatcacgcgggaatggaaacggcacggcgtgatcgt
gtgcaacaggattttcagcgtgataatgtgcaagtagtagtcgcaaccattgcttttgga
atggggattaataaatccaatgtgcggtttgttgcccattttgatttgcctcgtagcatt
gaatcttattatcaagaaacaggtcgggcaggacgtgatgatttacctgctgaggcggtt
ttgttttatgaaccagcggattacgcttggttacaaaaaattcttttagaaaaaccagaa
acgccacagcgtcagattgagcagcataaattagaagctattggagaatttgcagaaagc
cagacttgtcgccgtttagttcttctcaattattttggtgagcatcgacaaacaccatgc
aataactgtgatatatgccttgatcctcctaaaaaatatgatggattagtcgatgcgcaa
aaagtaatgtctactatttatcgagtggggcaatgtttcggtgcgcattatgtgatagtg
gtgttgcgtggaatgcataatcagaaaattattgaactccagcacgataaactttcagtg
tatggtatcggaaaagataaaagcaaagagcattggcagtctgtcattcgtcagcttatt
catttgggttttgtgcaacaggtcatcagtgaattaaatccaacgttgcagcttaccgaa
agtgcgaaagtgattttgaaaggcgaagaagagttagaactggcaatgcctcgtatttct
tcaatcagtaaaattgcccataatccacaacgtcaaggtgttgcaaattacgataaggat
ttatttgcacgcttgcgtttcttacgcaaacaaattgccgataaagaaaatattccgcca
tacattgtctttaatgatgcgacgttgcaagaaatggcacaatatatgccaacaagcaat
attgaaatgttgcaaattaatggcgtgggttcaattaaattagaacgctttgggctgcct
tttattaaacttattcaagaacataaggcaattttggcgaatgcgtaa
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