Haemophilus influenzae PittGG (nontypeable): CGSHiGG_05825
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Entry
CGSHiGG_05825 CDS
T00544
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hiq
Haemophilus influenzae PittGG (nontypeable)
Pathway
hiq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hiq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGSHiGG_05825 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hiq03021
]
CGSHiGG_05825 (rpoB)
03400 DNA repair and recombination proteins [BR:
hiq03400
]
CGSHiGG_05825 (rpoB)
Enzymes [BR:
hiq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGSHiGG_05825 (rpoB)
Transcription machinery [BR:
hiq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGSHiGG_05825 (rpoB)
DNA repair and recombination proteins [BR:
hiq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGSHiGG_05825 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ABR00076
UniProt:
A5UH20
LinkDB
All DBs
Position
complement(1058807..1062745)
Genome browser
AA seq
1312 aa
AA seq
DB search
MDSFDKFIQKDPEGQQGLEAAFRSVFPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGST
YAAGLRVKLRLVSYDKESSSRAVKDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHR
SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILR
ALGYTTEEILNLFFDKITFEIAGDKLLMTLVPERLRGETASFDIEANGKVYVERGRRITA
RHIKALEKDNISQVVVPSEYILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYT
TIETLFTNDLDYGPYISETLRVDPTYDKISALYEIYRMMRPGEPPTPESSEALFNNLFFS
AERYDLSTVGRMKFNRSLAFPEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNR
RIRSVGEMAENQFRIGLVRVERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQL
SQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGL
INSLSAFARTNDYGFLETPYRKVVDGQVTEEIEYLSVIDEANYIIAQANSNLDENNRFTD
AFVTARGERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAV
PTLRADKPLVGTGMEKPIALDSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDI
YNLIKYTRSNQNTCINQIPCVNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGY
NFEDSMLVSERVVQQDRFTTIHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGI
VYVGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVID
VQVFTRDGVEKDKRALEIEEMQLREAKKDLTEELEILEAGLFARVRNLLISSGADAAQLD
KVDRTKWLEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVV
KVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIG
QILETHLGLAAKGIGDQINAMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVL
RLAGNLRKGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYM
YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM
LTVKSDDVNGRTKMYKNIVSGNQHMEPGTPESFNVIMKEIRSLGLNIELDEE
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
ttggattcttttgataaatttattcaaaaagatcctgaaggtcagcaaggtttagaagcg
gcatttcgttctgtattccctattgtaagcaataatggctatacagaattacaatatgta
gattatcgtttagaagagccagagtttgatgtacgtgagtgccaaattcgtggctcaact
tatgcagcaggcttacgtgtaaaattacgtttagtgagctacgataaagaatcttcttca
cgcgcagttaaagatattaaagaaaatgaagtttatatgggggaaatcccattaatgact
gataacggtacttttgtaattaatggtaccgagcgtgttatcgtttcacaattacaccgt
agtccgggtgtattcttcgattctgacaaaggtaaaacccattcttcaggtaaagtgctt
tataacgcacgcattattccttaccgtggttcttggttagattttgaattcgatccaaaa
gataacttatttgcgcgcattgaccgtcgccgtaaattaccagcaacaatcattcttcgt
gcattaggctacaccactgaagaaattttaaacttattctttgataaaattacctttgaa
atcgctggcgataaattgttaatgactttagtgccagaacgtttacgtggtgaaacggct
tcttttgatattgaagcaaatggcaaagtgtatgttgaacgtggtcgtcgcatcactgct
cgtcacattaaagcattagaaaaagataatatctcacaagtggttgtgccttctgaatat
attttaggtaaagttgcgtcgaaagattatgttgatttagagtctggcgaaattatttgt
cctgcaaatggtgaaatttcgttagaaaccctcgcaaaattagcacaagctggttacacc
acgatcgaaactttatttactaatgatttagattacggtccatatatttctgaaacgcta
cgtgtcgatccaacttatgacaaaatcagtgcgctttacgaaatttatcgtatgatgcgt
ccgggcgagccaccaacaccagaatcttcagaagcgttattcaataatttattcttctct
gcagaacgttatgatttatctacagtaggtcgtatgaagttcaaccgttctttagctttt
ccagaaggggaaggtgcgggtattttaagcaatgaagatattattgcggtaatgcgtaaa
ttgatcgacatccgtaatggtcgtggcgaagtagacgatattgaccatttgggtaaccgt
cgtatccgtagcgtgggcgaaatggctgaaaaccaattccgtatcggtttagtgcgtgtt
gaaagagcggtcaaagaacgtctatctttaggcgatttagatgcgatcacgccacaagac
ttaattaacccgaaaccgatttctgcggcagtaaaagaattctttggttcttcacagctt
tcgcaatttatggatcaaaacaacccattgtcagaagtgacacacaaacgtcgtatttct
gcattaggtccaggcggtttaacgcgtgagcgtgcaggctttgaagtgcgtgacgtacat
aatactcactatggtcgtttatgtccgattgaaacccctgaaggtccaaacatcggtttg
atcaactcactttctgcttttgcacgtactaatgattatggtttcttagaaacaccatat
cgtaaagtggttgatggtcaagttactgaagaaattgaatacttatctgtaattgatgaa
gcaaactacatcattgcacaggcaaactcaaacttagacgaaaataaccgttttactgat
gctttcgttactgctcgtggtgaacgtggtgaatctggtttatataaacctgaagatatt
cactatatggatgtttcgacacaacaagtggtatctgttgcggctgcattaattccattc
cttgagcatgacgatgcgaaccgtgcgttgatgggtgcgaacatgcaacgtcaagcagtt
ccaacattacgtgcggataaaccattagttggtacaggtatggaaaaaccaatcgcactt
gactcaggtgttgcggttgttgcaaaacgtggtggtaccgttcagtacgttgatgcgtct
cgtattgtgattaaagtaaatgaagatgagactattgcaggtgaagctggtattgatatt
tataatttaattaaatacacccgctctaaccaaaatacttgtattaaccaaattccttgt
gtgaatttaggcgatccaattaatcgtggcgaagtattagcagatggtccttcaactgat
ttaggggaacttgcattaggtcaaaatattcgcgtagcgttcatgccttggaacggctat
aactttgaagactcaatgttagtttctgaacgtgttgttcaacaagaccgtttcactacg
atccatattcaagaattatcttgtgttgcgcgtgatactaagttaggtgcagaagaaatt
actgcggatattccaaacgtaggtgaatcagcgttaagcaaacttgatgaatctggtatc
gtttatgtcggtgctgaggttaaaggtggcgacatcttagtaggtaaagtaacccctaaa
ggcgaaactcaattaaccccagaagaaaaattgttacgtgcaatctttggggaaaaagct
tccgatgtgaaagattcttcattacgcgtgccaaatggtacatcaggtacggttattgat
gttcaagtcttcactcgtgatggcgtagaaaaagataaacgtgcattagaaatcgaagaa
atgcaacttcgtgaagcgaaaaaagatttaactgaagagttagagattttagaagctggt
ttatttgctcgtgtgcgtaatcttcttatttctagtggtgcggatgcagcacaattagat
aaagtagatcgcactaaatggttagaacaaaccattgcagatgaagaaaaacaaaaccaa
ttagaacagcttgctgagcaatacgaagaacttcgtaaagagtttgaacataaacttgaa
gtgaaacgtaagaaaatcattaaaggcgatgatcttgcaccgggcgtattaaaagttgtg
aaagtttaccttgcagtgaaacgtcaaatccagccgggggataaaatggcgggtcgtcac
ggtaacaaaggtgttatctcgaaaattaacccagttgaagatatgccatacgatgaaaat
ggtcagccagttgaaatcgtattaaacccactgggcgtaccgtctcgtatgaacatcggt
cagatccttgaaactcacttaggtttagctgcaaaaggtattggtgatcaaatcaatgca
atgcttaaacaaaaacaagaagtggaaaaattacgtagctatatccaaaaagcatacgat
ttattaggtaatggttcacaaaaagtggatttaagcacttttactgatgaagaagtattg
cgtttagcgggaaatttacgtaaaggcttaccagttgcaacgccagtgttcgatggtgca
gacgaagcggaaatcaaagaactattaaaacttggtggattaccaacttcaggtcaaata
accctttacgatggtcgtactggcgagaaatttgaacgtccagtaaccgtgggttatatg
tatatgctcaaattgaaccacttagttgatgataaaatgcacgctcgttcaacaggttct
tatagccttgttacacaacagccattgggtggtaaagcacaatttggtggtcagcgtttc
ggtgagatggaggtttgggcacttgaagcatatggtgcagcctacaccttacaagaaatg
ctaactgtgaaatccgatgatgtgaatggtcgtacgaagatgtataaaaatatcgtaagt
ggcaaccaacatatggagccaggcacaccggaatctttcaacgtaattatgaaagaaatc
cgctcacttggtttaaatatcgagttagacgaagagtaa
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integrated database retrieval system
