Heterobasidion irregulare: HETIRDRAFT_121480
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Entry
HETIRDRAFT_121480 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
hir
Heterobasidion irregulare
Pathway
hir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HETIRDRAFT_121480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hir03021
]
HETIRDRAFT_121480
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_121480
Transcription machinery [BR:
hir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
HETIRDRAFT_121480
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
HETIRDRAFT_121480
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCHC
zf-CCCH_4
zf-CCHC_3
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
20666753
NCBI-ProteinID:
XP_009540928
JGI:
Hetan2_121480
UniProt:
W4KNK3
LinkDB
All DBs
Position
Unknown
AA seq
290 aa
AA seq
DB search
MDNPLAGPSPLRDIVNPQFHQNNFPEELFIKTELGIKLDKDDQICRLHLTPAGCPLGPLH
CPLRHTTPSAQNFQPPKQLPTHPRERERLATVCKHWLRGLCKKGDACEFLHEYNLRRMPE
CWWYAKYGYCSAGDECLYAHPKERKVECPDYKRGFCKLGPGCPRKHVRRVACQLYLTGLC
PMGPDCSRGHPKPDLPPPKSYDPPSPPSHRDLGPPPPGYGRYADFDRGFGGGPGPAHGGA
GAGLPGPRRNLDEVLCFKCGEKGHYANHCRNRNVPGNRGGIERHTDEGPE
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggacaacccactcgccggcccatccccactgcgcgacattgtgaatcctcagtttcat
caaaacaactttccagaagaactctttatcaagaccgagctcggaatcaagctcgacaaa
gacgaccaaatatgccgtcttcatctgactcccgctggctgtccactgggcccgttgcac
tgtcctttgcgacacaccactccctctgcgcaaaactttcagccacccaaacaactgcct
acacatcctcgagaacgagagcgtctggccacggtgtgcaaacattggctgaggggtctc
tgtaaaaaaggcgatgcttgtgagtttctccatgagtacaacctaaggcgtatgcccgag
tgttggtggtacgccaaatatggctactgctctgccggtgatgaatgtttgtatgcccac
cccaaagagcggaaggtggagtgtcctgactacaagcggggattctgcaaacttggccca
ggctgcccgcgaaagcatgttcgacgcgtcgcttgtcaactatacttgacagggctttgc
cctatgggtcctgactgttcacgtggccaccccaaacctgatctgcctcctccaaagtca
tacgaccctccttctcctccgtctcatagagaccttggtccacctccacctggatacgga
cggtatgctgactttgaccgcgggtttgggggagggccaggtccggcacatggtggtgct
ggtgctgggctaccaggaccacggcggaacttagacgaagtgctatgtttcaagtgtggt
gaaaagggacattacgccaaccactgtaggaataggaacgttcctggtaatcgcggcggt
atcgagaggcacaccgatgaggggcccgagtaa
DBGET
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