Heterobasidion irregulare: HETIRDRAFT_150121
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Entry
HETIRDRAFT_150121 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hir
Heterobasidion irregulare
Pathway
hir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HETIRDRAFT_150121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_150121
03041 Spliceosome [BR:
hir03041
]
HETIRDRAFT_150121
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
HETIRDRAFT_150121
Spliceosome [BR:
hir03041
]
Complex B
Other components
Prp19-related factors
HETIRDRAFT_150121
Complex C
HETIRDRAFT_150121
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_2
Mad3_BUB1_I
ARM_TT21_C
TPR_5
MIT
Motif
Other DBs
NCBI-GeneID:
20667351
NCBI-ProteinID:
XP_009542539
JGI:
Hetan2_150121
UniProt:
W4KIN2
LinkDB
All DBs
Position
Unknown
AA seq
1203 aa
AA seq
DB search
MPSVVLETPTLESLQAPFPLAFPVPTPVTHPDLVSPKDIHREEDLLRNPSSFRHWWTAIH
STRDAQNALQKLEKSSGLEPEVAALLGPLASPAARKSLQRLTYLYEAALVHFSASFKLWK
SYLHMRMSYVLGKQLIRKRAGGRKKFPEMKDALEEEQEDLEEWEGGLDGVVGWEEWKALV
ATFERALMWLPKLPRLWLMYASIFNHPRCPSVLSHSHARRTFDRALRTLPPSLHHRIWVR
YLLWAEKKGGTTTVAVYRRYLAVDPSVTERYTALLLSPSNPSPRPLEAAKLLLSLARKAA
RGEYTSPEGKSPYQLLGEWLDVVESHAEEVGLDADETAEAVEAEKTVENENENANVAQIS
PQPASVGGQLIRFAGPPVTVTAAGEPAPPYDEDEDPTSARKLNIEKIIRQDGLAKYKDQA
GRLWTGLATYWIKRGEFDRAKATFESGIGSVLTIRDFTQIFDAYAEFSESLISALMDNLA
NLDEDDDEEEAQAETDARMKEFEALMDRRPFLVNDVLIRRNPNDVQEWEKRVALWGKDDE
KVAETYTQALSTINPRKATANFHRLYINFSYFYEEGGATGQAEVDLDNARKILEKATKVN
FRTVEDLAEVWCEWSEMEIRQEQYDEAIRVMQRAAAIPKNTKINYHDHSLPVQARLFKSL
KLWSFYVDLEESLGTVESTKAVYDKILELRIANAQVLVNYAAFLEENKYFEESYKVYERG
VELFTFPVSFEIWNIYLSKFIKRYGGTKLERARDLFEQALEKCPPKSCKPIFLMYAQLEE
DHGLAKRAMTIYDRATQAVADEDKFSMFTIYIAKAAANYGLPATRPIYERALEVLPDRQT
AQLCLRFASLERKLGEIDRARAIYAHASQFCDPRVNPDFWAEWHAFEIDTGSEDTFREML
RIKRSVQAQFNTEASYLAAQTMATRSGAPAKAVSNDVAATADPMAAAEKQAGGGKSGPAF
VAAKRSAVQNEDTESPKPAESRDRRYGRRISDTDVTSKEMSRNRAQHEKWYTPNFSKGQV
VQRGSSRTQVHPFILITRSMSAMRSSMNDSFGPTIRVRGSRINDVDVYARMDPDAPIKVN
NNHKPAEFLRAEAELVLDEARRQKAEKNKDLGEPIKLQGVPIDIKIRGRHIWIAENTAIA
RKMDLESCGLWGREDIDNWFMGPDHQAVGHRHESLDLVNASPRGLCQGTSSDTFPQPSGL
RKL
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgccttccgttgtactggaaacaccgacgcttgagtccctgcaggctccatttcctttg
gcattccctgtgcccaccccggtcactcatcctgacctcgtgtctccaaaagacatccac
cgtgaggaggatcttctccgcaacccttcttccttccgtcactggtggactgcgattcat
agcacgagagatgctcagaacgctctgcagaagctcgaaaagtcatccggcctcgagcct
gaagtggcagctcttctaggacctcttgcctctcccgctgctcggaagtcactacaacgt
ctcacgtatctatacgaggccgctctcgttcacttttcggcttcttttaaactatggaag
tcgtatcttcatatgcgcatgtcttatgtgctgggcaagcaacttattaggaagagggcg
ggtgggcggaagaagtttcctgagatgaaggatgcgctggaggaggagcaggaggatctg
gaggaatgggaaggtggattagacggcgtcgtcggctgggaagagtggaaggctctcgtt
gctaccttcgagcgcgctcttatgtggctaccgaagctgcctaggctatggctcatgtat
gcctcaatcttcaatcacccccgatgtccttctgtactctcgcactcccatgctcgccga
acatttgaccgtgctcttcgaactcttcctccatcccttcaccaccgaatatgggtgcgt
tatctcctttgggcggagaaaaagggtggaactaccactgttgcagtctatagaagatac
cttgctgtcgatcctagcgtcactgaacgctacaccgctctccttctctcaccaagcaat
ccctccccacgccccttggaagctgctaagcttttattatcccttgcccgcaaggctgct
cgaggagaatacacgagccccgaaggcaaaagcccatatcagcttctcggagaatggtta
gacgttgtcgaatctcatgccgaagaggttggtttggatgccgatgagactgcggaggca
gtcgaagccgagaagacggtagagaacgagaacgagaacgccaacgtcgctcaaatttct
cctcaacctgcctccgtgggtggacaactcattcgctttgccggtcctcccgtcactgtc
acagccgccggcgagccagcgcctccgtacgatgaagatgaggatccaaccagtgctcga
aagctcaatattgagaaaattattcgtcaggatggccttgcgaaatacaaagatcaagcg
ggacggctctggactgggcttgcaacgtactggatcaagcgcggcgagtttgatagggcg
aaggcaacattcgagtctggaattggatccgttctcaccattcgtgacttcacgcagatc
ttcgacgcatacgcagagttcagcgaatctttgatcagtgctttaatggacaacttggcg
aatcttgatgaggacgatgatgaggaagaagcacaggcggaaacagatgcaaggatgaag
gagttcgaagctttgatggaccggagaccgttcttggttaacgatgtgttgattcggcga
aatcctaacgacgtgcaagaatgggagaagcgggtcgctctttggggcaaagacgatgag
aaggttgccgaaacatatacccaggcgctctcaaccatcaaccctcgcaaagcaacggcc
aacttccaccgtctgtatatcaacttttcctacttctacgaggagggaggtgcgacggga
caggccgaagtcgatctcgacaatgctaggaaaattctggagaaggcgaccaaagtcaac
ttcagaactgtcgaagacctcgcagaggtttggtgtgagtggtctgagatggagatacgg
caggagcaatatgacgaggctatccgcgtcatgcagcgcgctgctgcgatcccgaagaac
accaagatcaattaccatgaccattctcttccagtccaggcccgcctgttcaagtctctc
aagttgtggtccttctatgtcgaccttgaagaatccttggggacggttgagtccaccaag
gcagtctatgacaaaatcttggagctacgcatcgcgaatgctcaggttctcgtgaattac
gctgcattcctcgaggaaaataaatatttcgaagagagctataaggtctacgaacgaggc
gtcgaactgttcacttttcctgtttcatttgaaatctggaatatatacctttcgaagttc
atcaaacgctatggcggcactaaactggaacgtgctcgcgatctctttgaacaagcactt
gaaaaatgcccacccaagtcatgtaaaccaatcttcctgatgtatgctcaactagaagag
gaccatggtttggcaaagcgtgcaatgacgatatatgatcgcgcgacccaagctgttgcg
gacgaagacaaattctcaatgttcacgatctacatcgcaaaagccgccgcaaactacggc
cttcctgccacccgacctatctatgaacgtgcattggaagtccttccagaccggcaaacc
gcgcaattgtgcctacgcttcgcctcacttgaacgcaaactcggggaaatcgatcgtgca
cgagcaatctacgcacatgcctctcaattctgcgaccctcgcgtcaaccccgacttttgg
gcagagtggcatgccttcgagatcgatacgggttcagaagacacctttagggagatgctt
aggatcaagagaagtgtgcaggcgcaattcaacacggaggcgagttatttggctgcgcag
accatggcgacaagatcaggtgcacctgcgaaggcagtcagcaacgacgtggcggcgacg
gcagatccgatggctgcagcggaaaaacaggcgggcggtggaaagagtggtccggcgttt
gtcgctgcgaagcgtagcgcagtacagaatgaggatacggaatcgccgaaacccgcagag
tcaagggaccggcggtatggccgaagaatttctgataccgatgtgacttcgaaagagatg
agcaggaatcgcgctcagcacgaaaagtggtacacaccgaacttttccaagggccaggtg
gtccagaggggctcctcgcggacccaggtccatcctttcattttgatcactagatccatg
tctgctatgcggtcttccatgaacgacagcttcgggcctacgatccgcgttcgaggctca
agaattaacgacgttgatgtatatgcaagaatggacccagatgcgccgatcaaggtcaac
aacaaccacaagccagcagagttcctgagggcagaggcggagctcgtcctggacgaggca
aggagacaaaaggcggagaagaataaggatctcggcgagcccataaagctccagggtgtt
cccatagacattaagattcgtgggagacacatctggatcgcagagaataccgccattgct
cgaaagatggatttggaaagttgcgggctctggggacgggaagatattgataactggttc
atgggaccagaccatcaagctgtgggacacagacacgaaagccttgatctcgtcaacgcc
agcccacgaggactttgtcaaggtacttctagtgataccttccctcaaccttctggtctc
aggaagctctga
DBGET
integrated database retrieval system
