Heterobasidion irregulare: HETIRDRAFT_306455
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Entry
HETIRDRAFT_306455 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
hir
Heterobasidion irregulare
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hir03009
]
HETIRDRAFT_306455
Enzymes [BR:
hir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HETIRDRAFT_306455
Ribosome biogenesis [BR:
hir03009
]
Eukaryotic type
90S particles
Helicases
HETIRDRAFT_306455
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Endotoxin_M
Motif
Other DBs
NCBI-GeneID:
20669406
NCBI-ProteinID:
XP_009541560
JGI:
Hetan2_306455
UniProt:
W4KRJ3
LinkDB
All DBs
Position
Unknown
AA seq
573 aa
AA seq
DB search
MEAFRLLSRGGVQFNKQRFQNEIDLFNKTRPRSTHEKEAAKDLDAELPADLDFFKYAKTG
APKRKASDLSVAAEHGEVSERKRRKLSEGADEEESEESEGERTPAEGPTPSNPIQRHKVT
AKGSNVPNSAETFEELKQRYNLPPHLMANLKQYEYKHPTGIQSHGIPILLESRDLAAISP
TGTGKTLSYLLPVMASLAAPISSSKSENGKGVRAVILAPTRELAHQIHNECMKLAQGRKW
RIVLFSKATAATLADPNVRNRVDIIISTPLRLVSSLQSGNLELENVRHLILDEADRMLDA
EFLSQVQEVVSSCTHENVQKAVFSATLPANAEKVAMDMLRNPIRVVVGLKDTPLPLIAQS
LTYVSDDPSKLPTILTYLNQPYNPPVLVFTSSQPRATSLAEELVLNGVPNVDCLHAGMSK
KEREDAVSRMRRGESWIMVSTEVMARGMDFKGVREVINYDFPQSVQSYIHRIGRTGRAGR
EGKAITYFTNDDAPYLKSIANVLLQSGSTVPQWILKLPKPSKLKRRQMGKVKRAEAVNPA
RKIGRNEAIKKRDMIAGSKRRKEKVTVEKSDVL
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggaagcattccgcttgctttcgcgtggaggggttcaattcaataagcagaggttccag
aacgaaattgacttgttcaataaaacgaggccaagaagtactcatgaaaaagaggcagcg
aaagatctggatgcagagcttccagccgacttagattttttcaaatatgcaaaaaccggt
gctcccaagcggaaggcatcagatttgtctgtagctgctgaacatggagaagtctcagaa
cgaaagagaaggaagctcagtgaaggcgccgacgaagaagagagtgaagagagcgaaggc
gaacgcactccagctgaaggccctaccccctccaaccccatccagagacataaagttaca
gcaaaaggctcgaacgtcccgaattcagcggaaacattcgaagagctcaagcagcggtat
aatttgccgcctcacctaatggccaacttgaagcagtatgagtacaagcatccgactggc
atacaatcgcatggcattccaatattgctggagtctcgggaccttgccgcaatatctcca
acaggtacagggaaaacgctgtcatacctcctccccgtcatggccagcctggccgcacct
atatcgagttccaagtcagaaaacgggaagggcgttcgagcggttattttagctccaact
cgagaacttgcacatcaaattcataacgagtgtatgaaactcgcccagggacgaaaatgg
cggatcgtcttgttcagcaaagccacggccgctactcttgcagatcctaatgtgcggaac
agagttgatatcatcatcagcacgcctctgaggcttgtttcgagccttcagtctggcaac
cttgaattggaaaatgttcgacatctcatattagacgaggcggatcgtatgttggacgca
gagttcctctcacaagttcaagaagtcgtttcatcttgcacacatgaaaacgtacaaaag
gctgttttcagtgctacactccccgcgaacgccgaaaaggtggcaatggatatgcttcgc
aacccgatacgtgtagtggtcggtctaaaagacacgcctttgccactcattgcacagtcc
ctcacatatgtgtccgatgacccttcaaaattgccgacgatcctcacttacttgaatcag
ccgtataacccgccagtcctcgttttcacatcctcgcagcctcgtgcaacatcccttgca
gaggaacttgttttgaacggcgtgcccaatgtggattgcttgcatgccggaatgagtaaa
aaagagcgtgaggatgcagtgagtcgaatgcggcgtggagagagctggatcatggtcagc
acagaagtcatggcgcgcggcatggatttcaagggagtgagggaggtcatcaattatgac
tttcctcaaagcgtacaaagctacattcaccgaatcgggcgtactggtagggcgggacga
gagggcaaagccatcacatattttaccaacgacgacgcaccatatctaaaatcgattgcc
aacgtcctccttcaatcaggatctacagttcctcaatggatcctcaaactaccaaagccg
tccaagctgaagcgaagacagatggggaaagtcaagcgcgccgaggctgtcaatcctgca
cggaagattggtcgaaatgaagcgatcaagaagcgggacatgattgctggtagcaagcgg
cggaaggaaaaagtcacagtggaaaaaagcgatgttttgtga
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