Heterobasidion irregulare: HETIRDRAFT_307566
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Entry
HETIRDRAFT_307566 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
hir
Heterobasidion irregulare
Pathway
hir03040
Spliceosome
hir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HETIRDRAFT_307566
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
HETIRDRAFT_307566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hir03041
]
HETIRDRAFT_307566
04121 Ubiquitin system [BR:
hir04121
]
HETIRDRAFT_307566
03400 DNA repair and recombination proteins [BR:
hir03400
]
HETIRDRAFT_307566
Enzymes [BR:
hir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
HETIRDRAFT_307566
Spliceosome [BR:
hir03041
]
Complex B
Other components
Prp19 complex
HETIRDRAFT_307566
Complex C
Prp19-CDC5 complex
HETIRDRAFT_307566
Ubiquitin system [BR:
hir04121
]
Ubiquitin ligases (E3)
U-box type E3
HETIRDRAFT_307566
DNA repair and recombination proteins [BR:
hir03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
HETIRDRAFT_307566
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
EIF3I
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
U-box
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_DCAF4
zf-Nse
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Beta-prop_IFT122_1st
Frtz
PT-TG
Motif
Other DBs
NCBI-GeneID:
20669501
NCBI-ProteinID:
XP_009541484
JGI:
Hetan2_307566
UniProt:
W4KRA0
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MFFCAISGEPPQDPVISSKSGHVYERRLIEKYITENGTDPITGEKLEEGDLISVKASPNA
APPRPPTHSSIPALLTALQSEWDALVLETFTLKQQYNSTRQELSYALYAQDAASRVVARL
MRERDAAREALATVQTSIGITPAAPGADVEMGDESAPSEGILPAAVVAQIDETHQTLSAS
RKKRKAPADYATPAQVKTFTAKHTISSLHSASPAGITSIAISSANPSQFLTGGNDKIVQL
YDRSTDKVLASLKGHTKKVNHVAFREHEGDPTLLLSAGADKIARVWSHDAASDEYIPRST
IKTHKGDVTGLAVHPTSTLLALASLDKTYSLHDLTTFTQLYRSSAAEESFSSLDVHPDGT
ILAVGTPTSTIQIFDIRSGDVAATLVAPDSTPFTVNTLSFSENGYHLLAPDSLSSVGIWD
LRKQKLGHSIPLGDNFKVNKVVYDYSARLLGVAGNEGVRVYAHKTWEELARFEEGGEASD
LVFGSKSLEIWGTSGREVRIWGLSE
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgttcttttgtgcaatctccggagagcctcctcaggaccctgtaatctcttccaagtcc
ggacatgtgtatgagaggcgtcttatagagaagtatatcaccgaaaatggcacggatccc
atcacgggagaaaagttggaggagggtgaccttatatcggtgaaagccagccccaatgcg
gctcctccccggccacccacacactcgtccattcctgcactcctgacggctttgcagagc
gagtgggacgcccttgtacttgagactttcaccctcaagcaacaatacaactcgactcgc
caagaattgagctatgcactatatgcacaggatgctgctagtcgcgttgtggcgcgtctc
atgagagaacgagatgcagctagagaggctctagcaaccgtccaaacgtctataggcatc
actccagcagcgccaggggccgatgtagagatgggtgacgagtcagcaccctcagaaggc
atccttcctgcagccgtcgtcgcccagattgatgagacgcaccaaacgctctccgcctct
cgcaagaaacgtaaggcgcctgccgattatgccacccctgcacaggtcaagaccttcacc
gcgaagcacaccatatcatcccttcattctgcatcccccgccggtatcacatctatcgcc
atttcgagtgccaatccctcgcagtttttgaccggtgggaacgacaaaattgttcagctt
tacgaccgaagcacggacaaggtgttggcgtcactgaagggccataccaagaaggtcaat
catgtagcattcagggaacacgaaggtgatcccaccttgttgctttctgcgggcgcagac
aagattgctcgtgtttggtctcacgacgccgcttccgacgagtatatccccaggtcgact
atcaaaacgcacaaaggcgatgttacgggcttagctgttcaccccacgtcgactcttctt
gctcttgcttcgctagacaaaacttactcactccacgaccttacgaccttcactcagtta
taccgctcttcagcagccgaggaatcattctcgtccttggacgtccaccctgatgggacc
attcttgccgttggtacacctacgtccaccatccagatatttgacatccggtccggggac
gttgcagcaacccttgttgctcccgatagcacaccgttcacagtgaacactctcagcttc
tcggagaatggttatcatcttctcgcccccgactctctctcgtctgtgggcatatgggat
ctgcgcaaacaaaagcttggacattcgatcccgcttggagataatttcaaagtcaacaag
gtcgtgtacgactacagcgcgcgtctcctcggtgttgcaggcaatgagggtgttcgcgta
tatgcacataagacgtgggaagagctggcgaggtttgaagagggaggtgaggcatctgat
ttggtgttcggatccaagagcttggagatctggggtactagtggcagggaggttagaatt
tggggcttgtccgagtaa
DBGET
integrated database retrieval system
