Heterobasidion irregulare: HETIRDRAFT_308387
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Entry
HETIRDRAFT_308387 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
hir
Heterobasidion irregulare
Pathway
hir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HETIRDRAFT_308387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_308387
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
HETIRDRAFT_308387
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
HETIRDRAFT_308387
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
Motif
Other DBs
NCBI-GeneID:
20669579
NCBI-ProteinID:
XP_009541242
JGI:
Hetan2_308387
UniProt:
W4KND0
LinkDB
All DBs
Position
Unknown
AA seq
185 aa
AA seq
DB search
MASDCLLPGQPVPLPRGPLPQLGSGIYMKDGEPRASLVGIPRYDASTLAISRVRPHPPAP
NSIVLGSVTRLSPQQAVVSITVVDGMPLPAGEEFTGVIRVQDVRATEKDKVKIADCFRGG
DVVKGLVISLGDARSYYITTARNDLGVLFATSEAGATMEPVSWQEMRCARTGRIERRKCA
KPEGV
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgactgcttgctcccaggccagcccgtccctcttcctcgcgggcctctgcct
cagcttggcagcggcatctacatgaaagacggggagcctcgggcgagcctcgtcggcatt
ccgcgctacgatgcatctactctggctatctctcgtgtccgtccgcacccgccggctccg
aactccatagtgctcgggtctgtcacgcgtctctcgccgcagcaagcggtggtgtccatc
acggtggtggacgggatgccactccctgcgggagaggaattcacgggcgtgatccgcgtg
caggatgtgcgcgcaaccgaaaaggacaaggtaaagatcgccgactgttttcgaggcggg
gacgtggtgaaggggctcgttatctcgctcggcgacgcgcggagctactacatcacgacg
gcgcgcaacgacctcggtgtcctgttcgcgacgagcgaggcaggtgcgacgatggagcct
gtgtcgtggcaggagatgcggtgcgctcggacggggaggatcgagcggcggaagtgtgcg
aagcccgagggcgtgtga
DBGET
integrated database retrieval system