Heterobasidion irregulare: HETIRDRAFT_317594
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Entry
HETIRDRAFT_317594 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K10610
DNA damage-binding protein 1
Organism
hir
Heterobasidion irregulare
Pathway
hir03420
Nucleotide excision repair
hir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
HETIRDRAFT_317594
09124 Replication and repair
03420 Nucleotide excision repair
HETIRDRAFT_317594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hir04121
]
HETIRDRAFT_317594
03400 DNA repair and recombination proteins [BR:
hir03400
]
HETIRDRAFT_317594
Ubiquitin system [BR:
hir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
HETIRDRAFT_317594
DNA repair and recombination proteins [BR:
hir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
HETIRDRAFT_317594
TCR (transcription coupled repair) factors
Cul4-CSA complex
HETIRDRAFT_317594
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
20670432
NCBI-ProteinID:
XP_009546431
JGI:
Hetan2_317594
UniProt:
W4K7S1
LinkDB
All DBs
Position
Unknown
AA seq
1254 aa
AA seq
DB search
MKVVTTFHPSSSVVSSLKCHLTPDTSLEHLVVAKINRIDIFSTRPEGLKHECGVDIWGRI
SALKAVASTNSRDNLLLLTDHPDPKVVLLTSRNSKTGGLLLELSQTIELYERNARPAEFL
QDVVVNASGRVAIASCYAGKLRAIVFKGDRMDVDFDVAVPEFSVLSLAFISSRSGIHALA
ILHLDHNQQVQLLSRDLDISAYELSPSPSLLLPPTPLPTAAYPFTDSPPILINVPSIESV
SFDDDDDAVFSGGVLVVGGRKIQLFPFASKDWQDKYKGKQRRLESKKKSKDEKLSLLAKE
KEKDRETKKRKAKANVDWPWSEVTAWCPVSGTGTSYIIGDAYGQLALLSLDRLQDQGLIL
LPLGQVSPPTTLTYLSSQVFYLGSHFGDSQLLRVHSSPFSALKLPTLLIAPSVVTVSPDF
LISNDKGKGKAGVDSRKDIGRVVRSQGNFLEVMDTWKNIAPIMDAVLADTDGSGHSNIVT
CSGGKNAGSLRVIRNGADFHEQALIEGFHDVTGLWSIRPTFKNLQDSHIIVSDGQQSSVF
RLNNTETVTRIDPLVAGFITKSPTLAVNNLARRTKKPGATSLTYEDSPLVVQVTPKRVVL
VEYDATLDMHRVVSEWAPSDQGVTWSRREIVLASVNSSQIVLALKGGRVAVWSPSTINGV
VGIDHIPCSHRDLAGEIAAISCSPINHSDPFSAFVIVGFWAPHRVEILSVTKANDYLGRV
CDPVHVPSLPRSLLLLGFVPPPAPTSSEYHSHLLIGLADGTLVSYSYQGQQLGDRKTMSL
GHSPVSLVRSQVDGRSTVLALGTTAAMLFWGKERLQRSPVLLKDASAASVVNTAWWQSCL
VAATSSGLVIGRVRDLDKMHIRSIPLGLDNPRRLAYSPALRTFGVGCVRTEPGRVGDAEM
MASSFKVLDDTTFQVLGQFACEMHHEVTAIQNVIVKGGDSHWCLGTANFDPAEKEPSQGR
LYVFSMNDRSSAHIALEIVASIDVPGCIYQLSSIDGFIVGAVNSSVAVYRLEAGDNPSLT
KVCEWNHNYLVMSLATHGSRLIVGDAISSVSILSFQGETLTTVARDYGPLWPVAVEAWGE
EGVVGANSDCNLFTFSVQRLEQRTVLYRDGHYHLDDLVNKIVLGAIHSSDAAEDAIESKA
LIFTASGRIGVLLDMGEELSLQMSAVQRNLSKIVTDVAGARHTRWRTPAGGRERTDADEA
AYGFLDGDFLEQFMNYSETSPEMEQIMSGENEAEKLAQKYAHIRRILETLQGMH
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtcgtcaccacatttcatccgtcgtcttcggtagtcagttccctgaaatgccat
ctcactcctgacacatctctcgagcatcttgttgtcgcaaagatcaacagaatagatata
ttctctactcggccggagggtctgaaacacgaatgtggtgtagatatatggggccgtatc
tcggctctcaaggctgtcgcatccacgaactctcgagataacctcttactactaacagac
catccagatccaaaggtagtcctacttaccagcagaaactcgaagacaggagggcttctg
ctcgagttatcgcaaaccatcgagctctatgaacgaaatgcgcgcccggctgagttcctg
caagacgtggttgtgaatgcatctggtcgagttgctattgccagttgttacgcaggcaag
ctgagggcaatcgttttcaaaggcgatcgaatggatgtggactttgatgttgcagtacca
gagttcagtgtactctctcttgctttcatatcgtcccgctccggtatacacgctctggca
atattgcacctggatcacaaccaacaagtgcagcttctttcgcgcgatttagatattagc
gcatatgagttatccccttctccatctctcttgctcccccctacccctctcccgactgca
gcatatcctttcacagacagtccacccatcctcatcaacgttccctccatagagtctgtg
agcttcgatgacgatgatgacgccgtgttctcagggggtgtgctggtagttgggggacgg
aagatccaattatttccgtttgcgtccaaagactggcaggacaaatacaagggtaagcaa
aggagattggaaagtaagaagaagagcaaggacgagaagctatcattgttggccaaagag
aaagagaaagacagagagaccaagaagcggaaggctaaggccaatgtcgattggccatgg
agtgaggtaacagcatggtgtcctgtctctgggaccggcactagttacatcattggggac
gcatatggccagttggccttgctctcgctcgaccgtttgcaggatcaggggctcattctt
cttccactcggtcaagtttctccaccgacaacgctcacgtacctgtcatcacaagtattc
tatctgggttctcactttggagactcgcaactccttagagtccactcatcgccattttcg
gcactcaaacttcccactttacttatcgcccctagcgttgtaaccgtctctcctgatttt
cttatatcaaacgataagggcaaggggaaggccggtgtcgactcaaggaaggacatcggc
cgagtcgttcggtcccagggcaatttcttagaggtcatggatacgtggaagaacattgcc
cctattatggatgcagtgctggcagatacagacgggagcggacattctaatatagtgaca
tgttccggcggcaagaatgctgggagcttgcgagtcatacggaacggtgcagacttccat
gaacaggcccttatcgaaggatttcatgatgtgacagggctatggtcgattcgacccacc
tttaagaatcttcaggactcacatatcattgtctcagacgggcaacaatcctctgttttc
cgcctgaacaacacagagacggtcacacgaatcgatccattagttgctggtttcatcaca
aagtctccgactctagctgtaaacaatctggccagacgcacaaagaaaccgggtgctacc
tctttgacgtacgaagactcgccactcgttgttcaggtcacccccaaacgggtagtgttg
gttgaatacgatgcaactctggacatgcatcgagtggtgagcgagtgggctccaagtgat
cagggagtaacgtggtccaggagagagatcgtacttgcctctgtcaacagcagccagatc
gttttggcattaaaaggaggccgggtagctgtgtggtcgccctcaaccataaatggtgtc
gtaggcattgatcatatcccatgtagccatcgcgatctggctggtgaaatagcggcaatt
tcttgcagcccaatcaatcattcggatccattctcggcattcgttattgtgggattctgg
gcacctcaccgcgtggagatcctgtctgttaccaaagcaaacgactacttagggcgtgta
tgcgatcccgtccacgttccatcgcttcctcgctctcttctattacttggtttcgtaccg
ccgcccgcaccgaccagctctgaatatcattcgcatctgttgatcggattggcagatgga
acgttggtatcatactcatatcaaggacaacaactcggcgacagaaaaaccatgtcacta
ggtcattcaccggtctctctagtcaggagtcaggtagatggacgctctactgtgcttgcg
ttgggaacgacagctgctatgttgttctggggcaaggagcgtctacagcgttcgcctgtc
ctcttgaaagatgcatctgccgcatccgtggtgaacactgcgtggtggcaatcgtgtctt
gtggccgcgacctcgtctggtctagtaatcggacgcgttcgcgacttggacaagatgcac
attcgctcaatccctttgggcttggacaaccctcgaaggttagcatattctcccgccctg
aggacctttggagtagggtgtgtgcgcacggagcctggacgtgttggcgatgcggagatg
atggccagctctttcaaagtgctcgacgacacgacgtttcaggttttgggtcaatttgca
tgcgagatgcatcatgaagtcacagctatccagaatgtcattgtcaaagggggggattcc
cactggtgcctggggacagcaaattttgacccggccgaaaaggaaccttcgcaaggacga
ttgtatgtcttttcaatgaatgacaggagttcggcacacattgctctcgaaattgtggcc
tcaatcgatgtccccggctgtatttatcagttgtcatcgatcgatggcttcatcgtgggc
gcggtgaattcttcggttgcggtttatagattggaggctggtgacaatccatctttgaca
aaagtctgcgagtggaatcataattacctagtcatgagcctcgcaacccatggctctcgc
ttgatcgttggagacgccattagctctgtctctatattatctttccagggtgagactttg
acaacagtcgcaagggattatggtcctttatggccagtcgcagtcgaagcatggggggaa
gaaggcgttgttggtgcaaatagcgactgcaacctctttactttcagcgttcaacgttta
gaacaaaggacggttttgtatcgagatgggcactatcatctcgacgaccttgtcaacaaa
attgtgctgggcgctatacattcgtcggatgccgctgaagatgcgattgaatcaaaagcc
ttgattttcacggcatcggggcggataggtgtccttcttgacatgggcgaggagctttcc
ttacagatgagtgctgttcagcggaacctaagcaagatcgtcaccgatgtcgcgggggct
cgtcatacaaggtggagaacgccagctggaggacgggagaggacggatgctgatgaggcc
gcttatggtttccttgatggtgatttcttagagcagtttatgaattactctgagacatca
ccggagatggaacagatcatgtcaggtgagaacgaggcagaaaagctggcgcagaagtac
gcgcatatacgacgaattttggagacccttcagggcatgcattag
DBGET
integrated database retrieval system
