Heterobasidion irregulare: HETIRDRAFT_322599
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Entry
HETIRDRAFT_322599 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
hir
Heterobasidion irregulare
Pathway
hir03018
RNA degradation
hir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HETIRDRAFT_322599
09123 Folding, sorting and degradation
03018 RNA degradation
HETIRDRAFT_322599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_322599
03041 Spliceosome [BR:
hir03041
]
HETIRDRAFT_322599
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
HETIRDRAFT_322599
mRNA degradation factors
5'-3' decay
Lsm complex
HETIRDRAFT_322599
Spliceosome [BR:
hir03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
HETIRDRAFT_322599
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
20670885
NCBI-ProteinID:
XP_009548437
JGI:
Hetan2_322599
UniProt:
W4K4C9
LinkDB
All DBs
Position
Unknown
AA seq
103 aa
AA seq
DB search
MDKPKREAILDLSKYVNERIRVKFTGGREVTGVLKGYDQLLNLVLDEVEEAVQGDKAMPN
GEVLEPEPHVRTLGLAVLRGPTITLLSPVDGLEEIANPFMVHE
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggacaagccaaaacgcgaggctatcctcgatctctccaagtacgtgaacgaacgcatc
cgtgtcaagttcacaggtggcagagaggtaacgggcgttttgaagggctatgatcaactt
ctcaacctcgtgttggatgaggtagaagaggccgtccaaggtgataaggcgatgccaaac
ggggaggttttagaaccagagccacatgttcgcacgttaggccttgcggtccttcgaggg
cccacaatcacccttctgagtcccgtcgacggactggaagagatcgccaatccattcatg
gtgcatgaatag
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