KEGG   Heterobasidion irregulare: HETIRDRAFT_326042
Entry
HETIRDRAFT_326042 CDS       T03455                                 
Name
(RefSeq) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
hir  Heterobasidion irregulare
Pathway
hir03013  Nucleocytoplasmic transport
hir03015  mRNA surveillance pathway
hir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    HETIRDRAFT_326042
  09122 Translation
   03013 Nucleocytoplasmic transport
    HETIRDRAFT_326042
   03015 mRNA surveillance pathway
    HETIRDRAFT_326042
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hir03019]
    HETIRDRAFT_326042
   03041 Spliceosome [BR:hir03041]
    HETIRDRAFT_326042
Messenger RNA biogenesis [BR:hir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     HETIRDRAFT_326042
    TREX complex
     HETIRDRAFT_326042
Spliceosome [BR:hir03041]
 Complex C
  Other components
   EJC/TREX
    HETIRDRAFT_326042
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    HETIRDRAFT_326042
SSDB
Motif
Pfam: RRM_1 FoP_duplication DUF8400 RRM_10
Other DBs
NCBI-GeneID: 20671202
NCBI-ProteinID: XP_009550102
JGI: Hetan2_326042
UniProt: W4JYY8
LinkDB
Position
Unknown
AA seq 212 aa
WVHDRAPAGGVARVSSGVATTVAGAGAGAPAPAANTRLVVSNLHYEITAKDLMAIFGQVG
TLTREPMIRYDRSGRSSGAGVVTFETASEAARAKDRYQGALAKGQPMEIEYEVTQRRHVR
SASAPSTLMQRMQKAPLIERLGRAETQAKHRGGGGIARGRGRGRGSVATGAPRQKAGEKS
ARELDRELDAFMGDGGVANSKGAAADQDVEMA
NT seq 639 nt   +upstreamnt  +downstreamnt
tgggtgcacgacagggcgccggcgggcggcgtcgcgcgcgtgtcgtcgggcgtagctacg
accgtggcgggcgcgggcgcgggcgcgccggcgccggctgcgaacacgcggttggtggtg
tcgaacctgcactacgagatcacggcgaaggatctgatggctatcttcggccaagtgggc
acgctcacccgcgagccaatgatcaggtacgaccgcagcggccgctcgtcgggcgcgggg
gtcgtcacgttcgagacggcgagcgaggcggcgcgcgcgaaggaccgctaccagggcgcg
ctggcaaaaggtcagccgatggagatcgagtacgaggtgacgcagaggcgtcatgtgcgg
tccgcgagcgctccgtcgacgctgatgcagcggatgcaaaaagcgccgctcatcgagcgc
ctcgggcgggcggagacgcaggcgaagcaccgcggcgggggagggatcgcgcggggacgc
ggacgggggcgtgggagcgtcgcgacgggggcaccgcgccagaaggcgggggagaagagc
gcgagggagctggacagggagctggacgcgttcatgggggacgggggggtcgcgaattcg
aagggcgcggcggcggatcaggacgtggagatggcgtga

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