Heterobasidion irregulare: HETIRDRAFT_326042
Help
Entry
HETIRDRAFT_326042 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12881
THO complex subunit 4
Organism
hir
Heterobasidion irregulare
Pathway
hir03013
Nucleocytoplasmic transport
hir03015
mRNA surveillance pathway
hir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HETIRDRAFT_326042
09122 Translation
03013 Nucleocytoplasmic transport
HETIRDRAFT_326042
03015 mRNA surveillance pathway
HETIRDRAFT_326042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_326042
03041 Spliceosome [BR:
hir03041
]
HETIRDRAFT_326042
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
HETIRDRAFT_326042
TREX complex
HETIRDRAFT_326042
Spliceosome [BR:
hir03041
]
Complex C
Other components
EJC/TREX
HETIRDRAFT_326042
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
HETIRDRAFT_326042
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
DUF8400
RRM_10
Motif
Other DBs
NCBI-GeneID:
20671202
NCBI-ProteinID:
XP_009550102
JGI:
Hetan2_326042
UniProt:
W4JYY8
LinkDB
All DBs
Position
Unknown
AA seq
212 aa
AA seq
DB search
WVHDRAPAGGVARVSSGVATTVAGAGAGAPAPAANTRLVVSNLHYEITAKDLMAIFGQVG
TLTREPMIRYDRSGRSSGAGVVTFETASEAARAKDRYQGALAKGQPMEIEYEVTQRRHVR
SASAPSTLMQRMQKAPLIERLGRAETQAKHRGGGGIARGRGRGRGSVATGAPRQKAGEKS
ARELDRELDAFMGDGGVANSKGAAADQDVEMA
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
tgggtgcacgacagggcgccggcgggcggcgtcgcgcgcgtgtcgtcgggcgtagctacg
accgtggcgggcgcgggcgcgggcgcgccggcgccggctgcgaacacgcggttggtggtg
tcgaacctgcactacgagatcacggcgaaggatctgatggctatcttcggccaagtgggc
acgctcacccgcgagccaatgatcaggtacgaccgcagcggccgctcgtcgggcgcgggg
gtcgtcacgttcgagacggcgagcgaggcggcgcgcgcgaaggaccgctaccagggcgcg
ctggcaaaaggtcagccgatggagatcgagtacgaggtgacgcagaggcgtcatgtgcgg
tccgcgagcgctccgtcgacgctgatgcagcggatgcaaaaagcgccgctcatcgagcgc
ctcgggcgggcggagacgcaggcgaagcaccgcggcgggggagggatcgcgcggggacgc
ggacgggggcgtgggagcgtcgcgacgggggcaccgcgccagaaggcgggggagaagagc
gcgagggagctggacagggagctggacgcgttcatgggggacgggggggtcgcgaattcg
aagggcgcggcggcggatcaggacgtggagatggcgtga
DBGET
integrated database retrieval system