Heterobasidion irregulare: HETIRDRAFT_327211
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Entry
HETIRDRAFT_327211 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K15172
transcription elongation factor SPT5
Organism
hir
Heterobasidion irregulare
Pathway
hir03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
HETIRDRAFT_327211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hir03021
]
HETIRDRAFT_327211
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_327211
Transcription machinery [BR:
hir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
HETIRDRAFT_327211
RNA polymerase I system
HETIRDRAFT_327211
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
HETIRDRAFT_327211
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOWx_SPT5
Spt5-NGN
Spt5_N
KOW5_SPT5
KOW2_Spt5
KOW1_SPT5
KOW
CTD
KOW7_SPT5
Motif
Other DBs
NCBI-GeneID:
20671305
NCBI-ProteinID:
XP_009551003
JGI:
Hetan2_327211
UniProt:
W4JVD9
LinkDB
All DBs
Position
Unknown
AA seq
1123 aa
AA seq
DB search
MYQNESSDPVAGLEDEGTTEQGQEQGRHERKKGKQQTRDHDDEEEEDEEDDEEDDEDEED
EDEDEDDEGLTRGRKRPKRRHKRSAVNRFLDVEAEVNEDEEEEEEDDEYGRDEFIAEPGG
EGDEDDIARRAVDHARLDRRQQDLDDQDLARIAEGYSQRYKRSAIRYTGDMNEVPQRLLM
PSVNDANLWQVRCKPGRERDLVFSLMRKAIDLEYTNHPLQILSSFQRDSLPGMIYVEARS
SKQVTEACNGLVGIYPSRGIILVPIEEMASLLQIKKQDLTVTPGSWIRIKRGKYGGDLAQ
VMDITENGEEVGLKFIPRIDLNPKDDASIDGKKRKKVGTAVSAGMRPPQRFFNYEEVVKV
YGRKMVSKRNQVYVFQNDTYKDGFIEKDFRLSALSLENVNPTLDEITRFTKGADGAEGEN
TVDLSIIAEASRKAAIAVLQPGDHVEVFEGEQSGVHGVVDSISQDIVIVSPVGVDLEGQK
VQVPARSVRKRFKPGDHVKVMTGKNADETGLVVSVAENIVTFLSDMSMQEVSVFSKDLRE
AAEVGSGTNIVGNYELHDLVQLDLQTVGVIFKTELDSFRVLDQNGQVRLVQPHQISMRRD
SNRAIATDSEGHELRIHDNVKEIDGEGRKGRVLHTHQSFFAFLHNRDIAENGGVFVTRAR
SLASLAPKGSVLKPGTDLSKMNPAINGAMTGGMVGSGNIGRGPRDRLIGVAITVVKGPYK
GYIGSIKDTNGPVARVELNTGNKVITIDKDKVKRRNPNGSLEPLESGYSSMGPPRNDYFA
SRGANPNSTPAPAWGASGRTPNPYADNQSRTPGWTTSRTPNPYADHSSRTPAWNSSSKTP
NPYAQDGGRTPAWNTSTRTPNPQSIGNWGGATPKPSGWSDQWGGSTPKAPGNTAWGGATP
GRTNWGGATPQVSAWATEEWVPSTPSTQAPTPGYISAQTPGMVATPAVTSYGSTWSAKTP
VGIFQGDMAAETPGGSGSYDYPYRTSELDKNWLTDPSIIVHAKRGMVVQLKGTRGDGGMP
NWSDGAHEGQTGTVESVADSQSEHLSTVAVIQMDKSPPQTLTVPVQYLVPVPPNGKGDEI
VALDGKFKGHRLKVMERGVGWVVSVDGGNYDDIPDGRCVLIRQ
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaaaatgagagctctgaccccgtggctgggcttgaggacgagggaactacggag
cagggacaagagcagggccgacacgagaggaagaagggcaagcagcagacaagagaccat
gatgatgaggaagaagaggacgaggaggatgacgaggaggatgacgaggacgaggaggat
gaggacgaagatgaggatgatgagggcttgacccgtggtcgcaagcggccaaaacggcgt
cataaacgttccgccgtcaaccgcttcctcgatgttgaagctgaagttaatgaggatgaa
gaggaggaggaggaagacgatgaatatgggcgtgacgaattcatcgcggaacccggtggt
gaaggagacgaggacgacatcgctcgcagagctgttgaccatgcgcgtcttgatagacgc
caacaggatttggatgaccaggacctggctcgcattgcagaggggtatagtcaacggtac
aagcgctctgcaatccgctacacgggcgacatgaacgaggtaccgcaacgtctactaatg
ccatctgtgaatgatgccaacctgtggcaagtgcggtgtaaacccggcagagagcgtgat
cttgtcttcagcttgatgcgcaaggccatcgaccttgaatatacaaatcatccgctccaa
attctgtcatctttccagcgcgactctctaccaggcatgatttacgtcgaggcgcgcagc
tcgaagcaagtcacagaagcatgcaacggacttgttggtatctaccccagccgcggtatc
attctcgttccgatcgaagagatggccagtttgctccagatcaaaaagcaggacttgaca
gtaacgccaggaagctggatacgcatcaagcgcggtaagtatggaggcgacttggcgcag
gtcatggacatcaccgagaacggagaagaagtcggcctcaaattcatcccgcgtatagac
ttgaatccgaaggacgatgcttctattgacggtaagaagcgcaaaaaagttggaactgct
gtgtcggcaggtatgcgccctccacagcgtttcttcaattacgaagaggttgtcaaggtc
tacggacgcaaaatggtctcaaagcggaatcaggtgtatgtgtttcaaaacgacacatac
aaggatgggttcatcgagaaagacttccgattgagtgcgctctctcttgagaacgtcaat
ccgacactcgacgaaattactcgattcaccaagggcgcggacggcgctgagggcgaaaac
accgtcgacctatcaattatcgctgaggcgtcgcgaaaggcagcgatcgcagtccttcag
cctggtgatcatgtggaggtgtttgaaggcgaacaatcaggcgttcatggtgtcgtggac
tcaatctcacaagatatcgtcatcgttagtccagtaggtgtcgacttggaaggtcagaag
gtgcaggttccggcgcggagcgttcgcaagaggttcaagcctggagaccatgtcaaggtg
atgaccggcaaaaatgctgacgagacaggcttggttgtgtcagtcgcagagaacatcgtc
accttcttgtcggacatgtcgatgcaggaggtttcagtcttctctaaagacttacgggaa
gctgctgaagtcggttccggaaccaatatcgtaggaaactacgagctgcatgatcttgta
cagcttgatcttcagactgttggagttatcttcaagacagagcttgattcgttccgtgtt
ttagatcagaatggccaagttcgcctcgtccagcctcatcagatctctatgcgtcgtgat
tcgaatcgagcaattgccactgattccgagggtcacgaacttcgtattcatgacaatgtg
aaggagatcgacggagaaggccggaaaggtcgggttctacacactcatcaatccttcttt
gcgttcctccacaatcgtgatatcgctgagaatggtggtgttttcgttactcgtgcacga
tccttggcgtcgctcgcaccgaagggttcggtcttgaagccgggaacagatctttcgaaa
atgaatcctgcgattaacggtgctatgactggtggcatggtgggctccggaaacattggc
agaggtccgagagataggctcatcggtgtcgcgatcaccgtcgtcaaaggcccctacaag
ggttatattggctctatcaaagatactaacggacctgttgcgcgtgtagagcttaacaca
ggcaacaaggtcatcactatcgataaagacaaggtgaagcggagaaatccaaatggtagt
ctagaacctctcgaaagtggttactccagcatgggacctccacgaaatgactacttcgca
tctcgaggagcaaaccccaatagtacaccggcaccggcgtggggcgcctcagggcggaca
ccgaatccttatgcagataaccaaagtcgcacgcccggatggactacatcacgaacacca
aatccctacgcagatcatagtagtcgtacacccgcatggaattcgtcttcaaaaacgcca
aatccttacgcgcaggacggtggtcgcacacctgcgtggaacacctcaacacggacacca
aacccgcagagcattggtaactggggtggtgcgacaccgaaaccttcaggatggagcgac
caatgggggggttcgacaccaaaagctcccggtaacactgcttggggaggggctacgcct
ggacgaacaaactggggaggagccactccacaggtgtcggcttgggccacagaagaatgg
gtaccctcaacgccatccacacaggcacctacacctggttacataagtgctcagactccc
ggaatggtagcaacacccgccgtgacatcatatggatcaacttggagtgcaaagacgcct
gtcggcatcttccaaggtgacatggccgctgaaactcctggagggtcaggatcatacgac
tacccataccgcacttctgagctcgacaagaactggctgacggatccgtcgataattgtc
catgctaaacgggggatggtagtacaactcaagggcacccgtggagatggcggaatgcca
aattggtccgatggtgcacacgaaggccagacgggcactgttgagagtgtagctgactct
caatccgagcatctgtcgacggtggccgtaatccagatggacaaatctcctccacaaacg
ctcactgtgcctgtccaatatcttgtacccgttccgcctaacggcaaaggcgatgagatc
gtcgctttagacggcaagtttaagggtcataggctgaaggtcatggaaagaggcgttggg
tgggttgtgtcggttgacggtggtaattacgacgacatcccggacggtcgatgcgttctc
atcaggcagtag
DBGET
integrated database retrieval system
