Heterobasidion irregulare: HETIRDRAFT_329543
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Entry
HETIRDRAFT_329543 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12586
exosome complex component RRP43
Organism
hir
Heterobasidion irregulare
Pathway
hir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HETIRDRAFT_329543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_329543
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
HETIRDRAFT_329543
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
20671501
NCBI-ProteinID:
XP_009551912
JGI:
Hetan2_329543
UniProt:
W4JRD2
LinkDB
All DBs
Position
Unknown
AA seq
285 aa
AA seq
DB search
MAYPQTTTDGEQDHLKALVFQRLHPRIYLERFVAEDVRPDGRQFSERRDISVNVGSISSA
DGSSLVRLGNTTIVCGVKAEIAEPELDRPNEGFLVPNLDLPAMSSPKFKSGPPSEEAQTL
SDRLNDVFVSSSLISLQSLCIHPGKAVWVLYVDATCINYDGNAFDAALIAMVSALKNTFL
PKATFNEDTGRTTCSRQTKIPLQIQKLPTSSSFGVFDSSHIFADPTSFEEPLMDTTLSIV
LDDNLQLISVTQLGLADSGTEDVLSTCIKIAKQHNQNLADRVYSV
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacccacagacgaccacggacggagagcaagatcatctcaaggctcttgtcttc
caacgtctgcatcctcgtatatatcttgaacgattcgttgcagaagatgttcgcccggac
gggcgtcagttcagcgagcggcgagacatttcggtgaacgtcggctcaatctcctccgcg
gatggatcgtccctcgtgcggttagggaacacgacaatagtgtgcggcgtcaaggcagag
atagcagagccagagcttgaccggcccaatgaagggtttctcgtccctaacctcgacctt
cccgcgatgagttctccaaaattcaaatcaggtccaccttcagaggaagcccagacgctt
tctgacagattgaacgacgtcttcgtttcatcgagtttgatatcattgcagtcgttatgc
atacatcccggaaaagcggtttgggttctctatgttgatgcaacatgtatcaactatgac
gggaatgcattcgatgcggcattgatcgccatggtctccgcccttaaaaatactttcctg
cccaaagccactttcaacgaggacactggtcggaccacatgctcacgacaaacgaaaata
cctctgcagattcagaaactacccacttcctcatcattcggtgtgtttgactcctctcac
atctttgccgacccaacgtctttcgaggagcctctgatggacactactctatctatcgtc
cttgacgacaatctacagctaatctcagtgacacaacttggattagcagattctggcact
gaggatgtgctctctacgtgcataaaaatagccaaacagcataaccaaaacctagctgat
agagtatattctgtttaa
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