Heterobasidion irregulare: HETIRDRAFT_378076
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Entry
HETIRDRAFT_378076 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
hir
Heterobasidion irregulare
Pathway
hir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HETIRDRAFT_378076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_378076
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
HETIRDRAFT_378076
mRNA degradation factors
5'-3' decay
Lsm complex
HETIRDRAFT_378076
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
20671915
NCBI-ProteinID:
XP_009541176
JGI:
Hetan2_378076
UniProt:
W4KN32
LinkDB
All DBs
Position
Unknown
AA seq
136 aa
AA seq
DB search
MDSLIPFTTSGSLVDCVDRKMLVILRDGRKLHGVLRSYDQFANLVLEDTVERIYHGNAVA
ERRAGLFLIRGENVVLLGEIDLDQEDDLPLAGVNFHALEANHQYNTALKKQHDEFKAQVL
YEQKGFCKEGGEGDGY
NT seq
411 nt
NT seq
+upstream
nt +downstream
nt
atggattcgttgatcccattcacaacctccggctcgctggtcgattgtgtggacaggaaa
atgctcgtcatcctccgcgacggccgtaagctccacggcgtcctgcgctcctacgaccag
ttcgccaacctcgtcctcgaggacaccgtcgaacggatataccacggaaacgcggtcgca
gagcgccgcgcggggctcttcctcatccgcggcgagaacgtcgtcctcctcggtgaaatc
gacctcgaccaggaggacgatctgccgctcgccggcgtgaacttccacgcgctcgaggcc
aaccatcagtacaacaccgcgctcaagaagcagcacgacgagttcaaggcgcaggtcctg
tacgagcagaagggcttctgcaaggagggcggcgagggagacgggtactag
DBGET
integrated database retrieval system