KEGG   Heterobasidion irregulare: HETIRDRAFT_378076
Entry
HETIRDRAFT_378076 CDS       T03455                                 
Name
(RefSeq) hypothetical protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
hir  Heterobasidion irregulare
Pathway
hir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HETIRDRAFT_378076
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hir03019]
    HETIRDRAFT_378076
Messenger RNA biogenesis [BR:hir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     HETIRDRAFT_378076
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     HETIRDRAFT_378076
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 20671915
NCBI-ProteinID: XP_009541176
JGI: Hetan2_378076
UniProt: W4KN32
LinkDB
Position
Unknown
AA seq 136 aa
MDSLIPFTTSGSLVDCVDRKMLVILRDGRKLHGVLRSYDQFANLVLEDTVERIYHGNAVA
ERRAGLFLIRGENVVLLGEIDLDQEDDLPLAGVNFHALEANHQYNTALKKQHDEFKAQVL
YEQKGFCKEGGEGDGY
NT seq 411 nt   +upstreamnt  +downstreamnt
atggattcgttgatcccattcacaacctccggctcgctggtcgattgtgtggacaggaaa
atgctcgtcatcctccgcgacggccgtaagctccacggcgtcctgcgctcctacgaccag
ttcgccaacctcgtcctcgaggacaccgtcgaacggatataccacggaaacgcggtcgca
gagcgccgcgcggggctcttcctcatccgcggcgagaacgtcgtcctcctcggtgaaatc
gacctcgaccaggaggacgatctgccgctcgccggcgtgaacttccacgcgctcgaggcc
aaccatcagtacaacaccgcgctcaagaagcagcacgacgagttcaaggcgcaggtcctg
tacgagcagaagggcttctgcaaggagggcggcgagggagacgggtactag

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