Heterobasidion irregulare: HETIRDRAFT_389434
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Entry
HETIRDRAFT_389434 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hir
Heterobasidion irregulare
Pathway
hir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HETIRDRAFT_389434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hir03041
]
HETIRDRAFT_389434
03009 Ribosome biogenesis [BR:
hir03009
]
HETIRDRAFT_389434
Enzymes [BR:
hir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HETIRDRAFT_389434
Spliceosome [BR:
hir03041
]
Complex A
U2 snRNP components
U2 related factors
HETIRDRAFT_389434
Complex B
HETIRDRAFT_389434
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
HETIRDRAFT_389434
Ribosome biogenesis [BR:
hir03009
]
Eukaryotic type
90S particles
Helicases
HETIRDRAFT_389434
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SRP54
AAA_19
nSTAND3
Flavi_DEAD
ResIII
T2SSE
PhoH
AAA_7
AAA_23
Motif
Other DBs
NCBI-GeneID:
20672410
NCBI-ProteinID:
XP_009551326
JGI:
Hetan2_389434
UniProt:
W4JTI5
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAGNRKQVDTDIYSKEPLFGFLPRKVNSEQVTKAMDGDVNPFTKRPHTPQYKKILAVRKK
LPVYAQMEEFYNMFSKHQIIVMVGETGSGKTTQIPQFVAYSDLPHMKNKVVACTQPRRVA
AMSVAKRVADEMDVPLGKQVGYSIRFEDMTEPGTTFLKYMTDGMLLREAMNDPDLNRYST
IILDEAHERTLATDILMGLLKSLVQRRKDLKLIVMSATLDALKFQKYFTVDAPAPLFKVP
GRTHPVEIFYTQEPEPDYVEAAIRTVLMIHRAEDPGDVLVFLTGEEEIEDACRKIKIEAD
DLQNQDPDSVGPIVCIPLYSSLPPQQQQRIFDAAPGSQTPHGPPGRKVIVSTNIAETSLT
IDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTERD
FMKELEEQTHPEILRSNLANTVLELVKLGIKDLVRFDYVDAPAPETLMRALELLNYLAAL
DDDGNLTALGGMMSEFPLDPQMAKMLIVSPEFKCSQEILTIVAMLSVPNVWVRPNNQRKE
SDAAKQLLTVPDGDHLTLLNVYNEYKTNQHDKNWTWSNYLSARSLAQADNVRSQLQRIME
RFDIDLVSVEYKDQRKHYENIRQALVCGFFMQVAHKEGEKGSYLTVKDNQVVSLHPSCGL
DTQPEWVIFNEFVLTTRPYIRTVTEVRPEWLLEFATSYFDLKQFPNGETKHALERIIKKR
LGKAGGPNGDGGRDRKRRKM
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctggcaacagaaagcaagttgataccgacatctactcgaaggagcctctgtttggc
ttcctcccccgcaaagtcaactcagagcaggtcacgaaggcgatggatggcgatgtcaat
ccatttacgaagcgtccccacacgccgcagtacaaaaaaatcctggcggttcgcaaaaag
ttgccggtgtatgctcagatggaagagttctacaacatgttcagtaaacatcagataatt
gtaatggtgggagagacgggatcaggcaagacgactcagataccccaatttgtggcctac
tccgatctcccgcacatgaagaataaagtcgttgcatgtacccagcctcgacgagtggca
gccatgtctgttgccaagcgggttgcagacgaaatggatgtaccactcgggaagcaagtc
ggctactcaatccgtttcgaagatatgacagagccgggcactacgttcctgaagtacatg
acagacggtatgcttcttcgtgaggctatgaacgatccggatctgaaccgatactcaacc
atcattctggacgaggcgcacgaacgcacgctcgcaaccgatattcttatgggactgctg
aaatctctggttcaaaggcgcaaggacctcaagctgatcgtcatgtctgcgactctcgac
gccctgaaattccagaagtatttcactgtcgatgcgccagcaccattattcaaggttcct
gggcgaacccatcctgtcgagatcttctatacgcaggagcctgagccggattacgtcgag
gctgcaatccgaaccgtgctcatgattcatcgcgccgaagaccctggcgatgtcctcgtc
ttcttgactggagaggaagagatcgaggatgcctgcagaaaaatcaagatcgaagctgat
gatctccaaaatcaggacccagactccgttggcccgattgtgtgtatcccactgtactct
tctcttccccctcagcagcagcaacgtatattcgacgcagcgccaggttcgcaaactcct
cacggcccgccaggtcgcaaagtcattgtatccaccaacatcgccgagacgtctctcacg
atcgacggtatcgtgtacgttgtagatcctgggttctcaaaacaaaaggtctataacccg
cgaatacgtgtcgaatcgctcctggtatcgcctatttcgaaagcttcagcgcaacaacgc
gcaggtcgagctgggcgaacacgaccaggaaaatgctttcgtctgtacacggagagggat
ttcatgaaggagctggaagagcaaactcaccctgaaattctgagaagtaatttggcgaac
acggttctggagctagtcaaactgggcatcaaggatctggtgcgattcgactatgtagat
gcgcctgcaccagagactctcatgagagctctcgaattgctgaattatcttgctgcgttg
gacgatgacggcaatctgactgcgttgggtggtatgatgtcggaattcccgcttgatcct
caaatggcgaagatgcttatagtcagtcctgagttcaagtgcagtcaagaaatcctcacc
attgtcgctatgctttctgtgcccaatgtctgggttcgaccaaacaatcaaaggaaggag
tcagatgctgcaaagcagctgttgaccgttcctgatggcgaccacctcactttattgaac
gtttacaacgagtacaagaccaatcagcacgacaagaattggacatggtcaaactatctt
tctgctcgttcgctcgctcaagccgacaacgtccgttcgcagcttcagcggatcatggag
cggttcgatatcgacctagtgtccgtggaatacaaagatcagcgcaagcattacgagaat
atcagacaggcgttggtctgtgggtttttcatgcaagtagcacataaggaaggcgagaag
gggagttacttgacagtcaaagataaccaggttgtttcgctgcatccatcatgtggtctt
gacactcaacctgaatgggtcatcttcaacgagtttgtgctcaccactcgaccatatatc
cgcacagtcacagaagtcagacccgaatggcttctggagtttgcgaccagctactttgac
ctcaagcagttccccaatggcgaaacgaagcatgcattagaacgcatcataaagaagagg
ctgggtaaagcgggcggtccaaatggcgatggaggccgggacaggaaacgtagaaagatg
tga
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integrated database retrieval system
