Heterobasidion irregulare: HETIRDRAFT_411258
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Entry
HETIRDRAFT_411258 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12881
THO complex subunit 4
Organism
hir
Heterobasidion irregulare
Pathway
hir03013
Nucleocytoplasmic transport
hir03015
mRNA surveillance pathway
hir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HETIRDRAFT_411258
09122 Translation
03013 Nucleocytoplasmic transport
HETIRDRAFT_411258
03015 mRNA surveillance pathway
HETIRDRAFT_411258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_411258
03041 Spliceosome [BR:
hir03041
]
HETIRDRAFT_411258
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
HETIRDRAFT_411258
TREX complex
HETIRDRAFT_411258
Spliceosome [BR:
hir03041
]
Complex C
Other components
EJC/TREX
HETIRDRAFT_411258
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
HETIRDRAFT_411258
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
20672939
NCBI-ProteinID:
XP_009550091
JGI:
Hetan2_411258
UniProt:
W4JXA2
LinkDB
All DBs
Position
Unknown
AA seq
226 aa
AA seq
DB search
MDKSLDEIISTRPKAIRRTAVRKTARQQLLGSAGTPPAARARIVPHAAAANGTKPVSIAT
QPADKIIVSNLPQDVNEVQIKELFQTTVGPLREVTLHYDSAGRSKGVASVHFSRKGDGSK
AYQQYNNRLIDGKRPMKIEVVVDPSKLPPAPSLASRVAPPPAAAAAPVAASAPARRGVVG
RGGARGGARRGGRRNERPPKSVADLDAEMEDYTASNGTTAPAVTAA
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggacaagtccctcgacgagatcatctccacccgccccaaggccatccgtcgcaccgct
gtccgcaaaactgcacgtcaacagctgctcggttccgctggcacaccccctgccgctcgc
gcccgcattgtccctcacgcagccgctgccaacggcacgaagcctgttagcatcgccacc
cagcctgcggacaaaattatcgtctccaaccttccacaagacgtgaacgaggttcaaatt
aaggaactcttccagactaccgtcggccccctgcgcgaggtcactcttcactatgacagc
gccggccgttccaaaggcgttgcctccgtacatttctcgagaaagggagacggcagcaag
gcataccagcaatacaacaatcgcctcatcgatggaaaacgcccgatgaagatcgaggtc
gtcgtcgacccatccaaacttcctcctgctccgtctctcgcatcccgtgtggccccacca
cctgcggctgcggctgcgcctgtcgctgcctctgcccccgctaggcgcggtgtcgttggt
aggggtggcgcacgaggcggagctcgtcgtggaggtcgtaggaacgaacgacctccgaaa
agcgttgctgatctcgatgctgagatggaggactacaccgccagcaatggcactacggcc
cccgctgtgacagcggcttga
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integrated database retrieval system