Heterobasidion irregulare: HETIRDRAFT_418400
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Entry
HETIRDRAFT_418400 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
hir
Heterobasidion irregulare
Pathway
hir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HETIRDRAFT_418400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_418400
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
HETIRDRAFT_418400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_CcmH_CycH
TPR_1
TPR_2
TPR_16
TPR_12
TPR_14
TPR_19
TPR_17
TPR_11
TPR_8
ANAPC3
TPR_9
TPR_22
PknG_TPR
TPR_6
TPR_Slam
DUF2225
T7SS_EccA1_N
ARM_TT21_C
DUF7017
TPR_NUP160_120_M
DUF3856
Motif
Other DBs
NCBI-GeneID:
20673477
NCBI-ProteinID:
XP_009547139
JGI:
Hetan2_418400
UniProt:
W4K3S1
LinkDB
All DBs
Position
Unknown
AA seq
1319 aa
AA seq
DB search
MTLQILPRLSRRSSTSAAKTDPKIRRLVSALSLYLPDSPFYSVLSSLPPPDPTNPTSTAT
HASQVAIQNSLPILEEIVSLIEADEGQRIEREVTNRRQRLNAAGPEEIAREVKGEVFEHS
RLPYFYDEILNHPNTSDELRRTTESKLLRHKQEYLYALPTTDDKAGLKSKLAAEVKDLVD
GIVLLKIGDELAWNMYIDGKDTDTIEGYGYENMRQFVELFPSAKLSQLIRGYSFYMSIPL
SENEDKENEDGEPAPDPDPVEAFDNMLEAFSSLQSSIFAHRVIAEVHLLEMDNPNAIVVA
EAGLGLVRRTSRNIGSDLSLVRKAFNVVLATSLVHHYPPKHHSRALRVIDEVLEFDADNV
PCLMGRGYICQHAKKWPEASQLFSRVVRLIPESLDDGLRAKEEHAWCLVHMDQVKEGADQ
LQQTLDILDNLNGRGEDKARCWWRLGRAHWEMGGPELETAYSNFIKALKCSSTFAPAFTS
LGIYYAEVANPADPNRASKCFQKAFELDAREGDAARRLAEGFAEESEWDLVEIVARRTIE
GEGGLEGGEVSNQGPAGRYLPTNAWAWKAVGAVELNRQKYSSAIQSFQVALRVDQDDELS
WLRLGEAYIKAGRHVAATKALARAQELKPDDWICSYFLGEVERQTGQFQEAITTFEKILE
NRPSEPGALMSLARTYLDLGLEERFTGLTARAESSFIKTLRVSLDFLDSTAGFRSVAWKA
LSDALYYLSQASLFADDNEIRDILSEVRGLIQLDTGERLAGIIPVPIEIPAIVTSLDVLK
AAVVAFNQRISVSLPNSSATGSAWFDLGVALNSLARRLSPGEQLVKAEKQAVSCVVEALR
NDPNEEGYWVALGNIHFEQQPKLSQHAYIKALESNSKNPATWTSLGLLYLHHDDPELANE
ALYKAQTLDPDYTLAWVGQALVATRNGHDSTSTSLLEHAVSLTADIPEADLEFGKRVFAR
HSQTVRSQTLATSDLFPAFFVLDRYVKQRPDDASALHLFSLVCERVGHVERAIELLTSAI
AILEAAYEDTEDPIVEQQFVIANTSLGRLRLTAHDYSGAIEPYQTALGLLSSKEEEEDID
ETTRVLLTQCRFGSALASVKLGEVEEALDWFDQALQSAGEDARMKGHISVLLAQTLWILG
TEESRESAKTQLLECIEADSENLNAINVLAALGISTDDDSLVDAALSEILALPLDRRQER
DPQRNVNHLILQHHLGQGDIIEALSQAQKAVVAEPSRQDARYALASFTLQSGEPSAARAS
LAGFDDDIESSRKSLGLSAVAEAQSDHDSGSARRLAQKAVMLSPWVRHNWEALAYVQSR
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgacgctacaaattctgccaagactatcgagaagatcatcgacttccgccgcgaaaacg
gaccccaagatcaggcgactcgtctctgctctgtctctctatctacccgactctcccttc
tactctgtgttgtcctctctccctccgcctgacccgacaaatcccacctcgacggcaaca
cacgccagccaagtcgccatccaaaactcgcttccaatattggaggagattgtttcgttg
attgaagctgatgaaggccagagaatcgaaagagaggtcaccaaccgccgtcagcggctc
aacgccgcaggtcccgaagagatagcacgagaagtcaagggagaagtgtttgaacattca
cgactcccatatttttatgacgagattcttaaccatccgaacacctccgacgagttgcga
cgtacgacggagtcgaaactccttcgacataaacaggagtacttgtatgctctaccaacg
accgatgataaagcaggcttgaagtcaaaattggcagcggaggtcaaggatctcgtggat
ggcattgtcctactaaagattggagatgaattggcatggaacatgtatatcgacgggaag
gatactgataccatagagggatatggctacgagaacatgcggcaattcgtggagttgttc
ccgtcggcaaagctctcgcagcttattcgagggtactccttttacatgagcattcctctg
tccgagaacgaggacaaggaaaatgaagatggcgaaccagccccggatccagatccggta
gaagcctttgacaacatgctggaggctttttcaagcctacaatcatcaatcttcgcccac
cgcgtgattgccgaagtacatctgcttgagatggacaatcctaacgccattgttgttgcc
gaggctggcttgggactcgtgcgaaggacaagcaggaacataggcagcgacctctcacta
gtccgcaaggctttcaacgtcgttctggcaacgtcattggtacatcattaccctcccaag
caccactcccgagccctccgcgtcatcgacgaggtcctcgaattcgatgccgataatgta
ccctgtctgatgggccgtgggtatatctgccaacatgcgaagaaatggcctgaggcgagt
cagctcttctcgcgcgtcgtgagactgatacccgagagtcttgatgacgggctgcgtgcg
aaggaggaacacgcgtggtgtttggtacacatggaccaggtcaaggaaggcgcggatcag
ctccaacaaactctcgacattctcgataatctgaacgggagaggcgaggacaaggcacgt
tgttggtggcgactgggccgggcacactgggagatgggaggtccagaattagaaacagcc
tacagcaatttcatcaaagcactcaagtgctcctcgaccttcgcgcccgcattcacgtcg
ctgggcatttactatgctgaagtggccaatcctgcagacccgaatcgtgcctctaagtgt
ttccagaaagcgttcgagctcgacgcgcgagagggagatgcggctagaaggcttgccgaa
gggtttgctgaagagagtgaatgggaccttgtggagattgttgcgagacggacgatcgaa
ggtgagggcgggctggagggaggagaggtgtctaatcagggaccggctgggagatatctg
cctaccaacgcatgggcgtggaaggctgtaggtgcggtcgaactgaaccgacagaaatac
tcgtctgctatccaatcctttcaagtcgctcttcgtgtggaccaagacgacgaattatca
tggcttcgtctgggcgaggcttatatcaaagctggccgtcacgtcgctgctacgaaagct
ctcgctcgtgctcaggaattgaagcccgacgactggatatgctcgtacttcctcggtgag
gtcgaacgccagacgggtcaattccaggaagcgatcacaactttcgaaaagatcctggag
aatcgcccctcagagcccggtgctcttatgtctcttgctcgaacatacttggaccttggc
ttggaggagagattcactggcttgaccgccagagctgaaagttcgttcatcaagactctc
cgtgtttctcttgacttcctagattcgactgcgggattcaggagcgtagcctggaaggct
ctctctgacgctctctactacctttcccaagcctctttatttgcagacgacaacgaaatt
cgagacatcctttccgaagtccgtggtctcattcaactagatacaggcgaacgacttgct
ggtataatacctgtcccaatagaaatcccagctatcgtcacaagtttagatgttctcaag
gccgccgttgtcgcgttcaatcaacgtatctccgttagtctaccgaactcttcggctaca
ggaagcgcctggttcgacttgggagtagcgttgaactcgctggctcgccggctgtcgccc
ggggagcagcttgtaaaggcagagaaacaggcggtgagctgtgtcgtcgaggccctgcga
aacgaccccaacgaagaaggatattgggtcgctctgggaaatattcatttcgaacagcag
ccaaaattgtcgcagcacgcgtatatcaaggcgctggagtcgaattcgaaaaatcctgcg
acttggacgagtctggggttgttgtatctgcatcatgacgatccggaacttgccaatgag
gctctatataaggcccaaacactagatccagactacactttggcctgggtaggtcaggcc
ctagtagcaacacgcaacggacatgattcgacgtcgacgtcgctactcgagcatgcagtc
agtcttaccgcagatatccccgaagcagaccttgagtttgggaagcgggtgttcgctcgg
cattcccagaccgtgcgttcccagactctcgccacctccgatctgtttccagcgttcttc
gtgttggaccggtacgtcaaacaacgaccagacgatgcgtctgccctccaccttttcagt
ctcgtttgcgagcgagtgggccatgttgaacgcgctatcgagctcctcacaagcgcgatc
gccatcctggaagccgcttatgaagataccgaggaccccatcgtcgagcagcagttcgtc
atcgctaacacgagcctcgggagactgcgtctcactgcgcacgactattccggcgcaatt
gagccgtatcagactgcgttgggattgctgtcttcaaaagaagaggaagaggacatcgac
gaaaccacgagggtcctgctcacacaatgccgatttgggtcagctttggcgagcgtgaag
ctaggtgaggtggaggaagctctggattggttcgatcaagcgctgcagtctgcaggtgag
gatgcccgaatgaagggccatatcagtgtgcttctggctcagacactttggatattgggc
acggaggaaagtcgggagagcgcaaagacccaactgctcgaatgcattgaagctgattcg
gagaatttgaacgccatcaacgtcctggcagcactgggtatatcgacagacgacgacagt
ctcgtcgacgccgcactctccgaaattctggccctcccactcgatcgccgacaggagcga
gatccccagcggaatgttaatcatctcatactgcaacatcacctaggacaaggtgatatt
attgaggcactctcccaagcgcaaaaggcggttgtcgccgaaccttctcgacaagatgct
agatatgcacttgcgtcgtttacattacagagcggggaaccatctgctgctcgagcatcc
cttgcaggctttgacgacgacatcgaaagttcaaggaagtcgctcggtctttctgcagtg
gccgaggcgcagagtgatcacgattcaggcagcgcaagacgtttggcacaaaaagcggtg
atgttgagtccctgggtaagacacaattgggaagcactagcatatgtgcagagtcgatag
DBGET
integrated database retrieval system
