Heterobasidion irregulare: HETIRDRAFT_431836
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Entry
HETIRDRAFT_431836 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
hir
Heterobasidion irregulare
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hir03041
]
HETIRDRAFT_431836
03009 Ribosome biogenesis [BR:
hir03009
]
HETIRDRAFT_431836
Enzymes [BR:
hir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HETIRDRAFT_431836
Spliceosome [BR:
hir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
HETIRDRAFT_431836
Ribosome biogenesis [BR:
hir03009
]
Eukaryotic type
90S particles
Helicases
HETIRDRAFT_431836
Pre-60S particles
HETIRDRAFT_431836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Gal80p_C-like
Motif
Other DBs
NCBI-GeneID:
20674569
NCBI-ProteinID:
XP_009541406
JGI:
Hetan2_431836
UniProt:
W4KP83
LinkDB
All DBs
Position
Unknown
AA seq
548 aa
AA seq
DB search
MSSDDEVAAPAPKPQESEPGRPPFSTLELSEPTMRALEDMGFSTMTPVQAKSIPSLLAGK
DVLGAARTGSGKTLAFLIPAVELLHRMKFKPRNGTGVIIVSPTRELALQIFGVAKELMAH
HSQTFGIIMGGATRRAEVEKLNKGVNLLVATPGRLMDHLQETPGFVFRNLKALVIDEADR
ILEVGFEDQMKKIISILPSEDRQSMLFSATQTTKVQDLARISLRPGPLYIDVDGTETTST
VTTLSQGYVVCPSDRRFLLLFTFLKKNLKKKVVVFFSSCNSVKYHGELLNYIDVPVLDLH
GKQKQQKRTNTFFEFCNAETGILLCTDVAARGLDIPRVDWIVQFDPPDDPRDYIHRVGRT
ARAGKVGKSLLFLLESELGFLRYLKEAKVPLNEFTFPAERIANVQSQLEKLLQKNYFLHQ
SARDGYRSYLQSYASYSLKKIFDVNQLDLAKVGKAFGFSVPPRVNVNIGGGKGGTGRTGV
KRRREDADVHEDEWEDVDGASDRNEGGRNAPRRRGKDRRIETLGRKKVDKEVYRKSIQKQ
GSQGQWSR
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtgacgacgaggtagctgccccggctccaaaacctcaggagagcgagcccgga
agaccaccgttctctaccctagagttgtcggaacctacaatgcgggctctggaagacatg
ggcttcagcacgatgacaccggtgcaagccaagtccattccttcactactagctggaaag
gacgttctgggtgctgcacgtacgggctcaggaaaaactctggcgttcttgattcctgcc
gtggagcttctgcacagaatgaagttcaagcctcggaatggaactggggtcatcattgtt
tcaccgactcgagagctagcattgcagatttttggcgtcgcgaaggagctgatggcgcat
cactcgcagacttttggtattattatgggcggggctactcggagggccgaggttgagaaa
ttgaacaagggtgtcaacttgcttgttgcaacaccaggtcgtttgatggaccatctgcag
gaaactccaggatttgtgttccggaacttgaaagcactcgttattgacgaggccgaccgg
atattggaggttggtttcgaagaccagatgaaaaaaatcatctctatacttccaagtgag
gaccgacaatccatgctcttctctgcgacacaaaccacgaaagtgcaagaccttgctcgg
atatcgttacggccaggacccttgtatatcgacgtagatggaacggaaacaacaagcacc
gtgacaacactatcccaaggctacgttgtttgcccctccgaccgtcgtttccttcttcta
ttcactttcttgaagaagaatttgaagaagaaggttgttgtattcttctctagctgtaat
tcagtaaagtaccatggcgaactattgaactacatcgatgtaccagtactcgatcttcat
ggaaaacaaaaacaacaaaagcggacgaacacattcttcgaattctgcaatgctgaaact
ggtatcctactttgcacagatgtcgcagcccgtgggctcgatattccacgtgtagattgg
attgttcagttcgacccaccggatgacccccgcgattacatccatcgtgttgggcgtacg
gcgcgcgcagggaaagttggcaagagtttgctattcctcctcgaaagcgagctcggtttc
ttgcgatacttgaaagaggctaaagttccattgaacgagtttacattcccggcggaacga
attgctaacgttcaatcgcaactcgaaaagctcttgcagaaaaattatttcctacaccag
tcggccagagatggctatcgatcatacctccagtcttacgcttcgtattcactcaagaaa
attttcgacgtaaatcagttggatctcgcgaaagtcggcaaagcgttcggcttctccgtc
cctcctcgtgtaaacgtaaacattggtggtggtaagggcggtaccggccgcactggagta
aagcgaagaagggaagatgcggacgtccatgaggacgaatgggaagatgtagatggcgca
tcagaccgaaatgaagggggccggaatgcgccgcggcggagaggcaaggacaggcggata
gagacgttaggcaggaaaaaagtcgataaagaagtctacagaaagtcgatacaaaagcaa
ggttcgcagggtcagtggagtcgatga
DBGET
integrated database retrieval system
