Heterobasidion irregulare: HETIRDRAFT_435179
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Entry
HETIRDRAFT_435179 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
hir
Heterobasidion irregulare
Pathway
hir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HETIRDRAFT_435179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_435179
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
HETIRDRAFT_435179
mRNA degradation factors
3'-5' decay
Pan complex
HETIRDRAFT_435179
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
PK_Tyr_Ser-Thr
Motif
Other DBs
NCBI-GeneID:
20674806
NCBI-ProteinID:
XP_009548435
JGI:
Hetan2_435179
UniProt:
W4K2F1
LinkDB
All DBs
Position
Unknown
AA seq
451 aa
AA seq
DB search
MMLPPEYEVGHVMDYYPSQATFMRAPRSETFRTAPAPGLNLPEELQGYHTLVPLESTTGE
RRKFGSWYSTVYRATGKDDRGYVLRRIESYRLTHQAAFTAIEQWSRIGHPNIVTVHEAFT
TRSFGDSSLVVAYAYHPNALTLYDAHIKPKAPIFQNGRLTAASQHLPERTIWSYIIQIAS
AIKAVHDKGLAVRMIDVTKILVTGKNRIRIASCGLADVLTYNPSIAAPPTPGTPSNGGST
NISQAASSVMMLLQLEDLSMLGKLIFALCCNNVAAVSNLSKAVDIVSKQYSADLKVLALF
CISKPGLHKHIGQVFDMIGSRLLTEMDDLQHGIDHLEGELMSELENARLVRLLCKFGFIN
ERPEFARDARWSETGDRYIIKLFRDYVFHQVDEHGNPVVNLSHVLACLNKLDAGTDERIM
LVARDEQSVLVVSYQDVKACVESAFFELARR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgccccctgagtatgaagtcggccatgtcatggattactacccctctcaagcg
accttcatgcgtgcccctcgctcggaaacttttcgcaccgcgcccgctccggggctcaac
cttccagaagaattgcaaggttaccatactcttgtccctctcgaaagcaccactggggaa
cgacgaaagtttggatcatggtacagcacggtatatcgtgcgaccggcaaagacgatagg
gggtatgtcttgagacgcattgagagttaccgccttacacatcaggcagcgtttacggcc
atcgagcaatggtctcgcataggtcatcctaatattgtcactgttcatgaagccttcacg
acgcgttccttcggtgatagctctctcgtcgtggcatacgcataccaccctaatgcgctc
acactctacgatgctcatatcaagcctaaggccccgatctttcagaacgggcgtttgacc
gctgcctcgcaacatctcccggaacgcacgatctggagttacatcatacagatcgcaagc
gcaatcaaggccgttcatgacaagggacttgctgttcgtatgattgatgtcacgaaaatc
cttgtcactgggaagaaccggattcggattgcatcttgcggcctcgcggacgtcctcact
tataatccttccattgcggcgcctcctactcctggtacgccgagcaatggtggcagcacc
aacatctcacaggccgcatcatctgtcatgatgctattgcaactggaagatctttcgatg
ctcggaaagctcatatttgcgttgtgttgcaacaatgtcgcggcggtcagtaacctttca
aaagcagtagacatcgtcagcaagcaatacagcgcagacctgaaggttttggcgctcttc
tgcataagtaagcctggcctccataagcacatcggccaagtatttgatatgatcggatct
aggcttctgacggagatggacgatctgcaacatggaatagaccatcttgaaggcgaactc
atgtccgagctcgagaatgcacgcctcgtccggttgctgtgcaagtttggttttatcaac
gaacgccctgagttcgcccgcgatgcgcgttggtcagagaccggtgaccgatacatcatt
aagctcttccgggattatgtttttcatcaagtcgacgaacacggaaatccggtcgtcaat
ttgtcgcatgtccttgcgtgcttgaataagttggatgccggaaccgatgagcggataatg
ttggtcgcacgcgacgaacagagcgtgttggtcgtcagttaccaggacgtcaaggcctgt
gtcgagtccgcgttttttgaactggcacgcagataa
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