Heterobasidion irregulare: HETIRDRAFT_438078
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Entry
HETIRDRAFT_438078 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hir
Heterobasidion irregulare
Pathway
hir03013
Nucleocytoplasmic transport
hir03015
mRNA surveillance pathway
hir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HETIRDRAFT_438078
09122 Translation
03013 Nucleocytoplasmic transport
HETIRDRAFT_438078
03015 mRNA surveillance pathway
HETIRDRAFT_438078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_438078
03041 Spliceosome [BR:
hir03041
]
HETIRDRAFT_438078
Enzymes [BR:
hir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HETIRDRAFT_438078
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
HETIRDRAFT_438078
Spliceosome [BR:
hir03041
]
Complex C
Other components
EJC/TREX
HETIRDRAFT_438078
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
HETIRDRAFT_438078
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
20675010
NCBI-ProteinID:
XP_009541563
JGI:
Hetan2_438078
UniProt:
W4KPP8
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MSSHDNEELIDYEDEHDVAPNGATVASVTNGAAAPAVSADGDDKDKKNFSGIHSTGFRDF
LLKPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPV
NGEVSVIVLCHTRELAFQIRNEYTRFAKYMPDVRVGTFFGGTPVAKDAELLKDKTKCPHI
VVATPGRLNALVRDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFS
ATLAKEIRVTCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEVGKNRKLNELLDTLEFN
QVVIFVKSVARAIELDKLLVSCNFPSISIHSGLTQEDRINRYIAFKAFEKRILTATDIFG
RGIDVERVNIVVNYDCPPDADSYLHRVGRAGRFGTKGLAITFVSSEADQQVMGAIQSRFE
VAVPELPEHIDPASYMTS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgcacgacaacgaggaacttatcgactacgaggacgagcatgatgttgcccct
aatggcgccactgtagcatctgtcacgaatggggcagcggctcccgcagtgtcagcagac
ggggacgacaaagacaagaagaacttctctggaattcattcgacgggcttcagggatttc
ttgttgaaacccgagttgttgcgtgccatcagtgatcttgggtttgagcacccatcagaa
gttcaacaggaatgcattcctcaggccgtgctgggaatggatgtcctttgtcaggcaaaa
tctggtcacggaaaaacggcagtctttgtgttggccactttgcagcagttggagccagtg
aatggcgaagtctctgtcattgtgctatgccacacacgtgaacttgccttccagatcagg
aatgagtacacgcgttttgcgaagtacatgcccgatgttcgtgttggcactttcttcggt
ggtacgccagtcgccaaggacgccgagcttcttaaagacaagaccaaatgccctcacatc
gttgtggcaacccccggtcgtctcaatgccctcgttagggataaggtcctggatgcgaaa
aacgtcaagcacttcgtgttggacgagtgcgataaaatgctagaacagcttgacatgcgc
cgcgacgtgcaagaaatcttccgcgcgacccctcatcacaaacaagttatgatgttcagc
gcaacgttggcgaaggaaattcgtgtgacgtgtaaaaagttcatggccaatcctttggag
atcttcgtcgacgatgagaccaagctcacgcttcacgggctacaacaacactatgtcaag
ttggaggaagttggcaagaacaggaagctcaacgagttgcttgacacactcgagttcaac
caggttgtaatcttcgtcaagtcagttgcgcgtgccattgaattggacaagttgttggtg
tcttgcaacttccccagcatcagtattcactcggggcttacccaagaagatcgtatcaac
cgttacattgctttcaaggctttcgaaaagcgtatactcactgccaccgatatcttcggt
cgtggcattgatgtcgagcgcgtgaacatcgtcgttaactacgattgccctcctgatgct
gatagctacctgcatcgtgttggtcgtgctggtcggtttggaacgaagggtctcgcgata
acgtttgtctcgtccgaggcagatcagcaagtcatgggtgccattcagtctcggttcgaa
gtggccgtgccggaattgcctgagcacatcgaccccgctagttacatgacctcttaa
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