Heterobasidion irregulare: HETIRDRAFT_440329
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Entry
HETIRDRAFT_440329 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
hir
Heterobasidion irregulare
Pathway
hir03020
RNA polymerase
hir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HETIRDRAFT_440329
09124 Replication and repair
03420 Nucleotide excision repair
HETIRDRAFT_440329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hir03021
]
HETIRDRAFT_440329
03400 DNA repair and recombination proteins [BR:
hir03400
]
HETIRDRAFT_440329
Transcription machinery [BR:
hir03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
HETIRDRAFT_440329
DNA repair and recombination proteins [BR:
hir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
HETIRDRAFT_440329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
RNA_pol_L_2
Motif
Other DBs
NCBI-GeneID:
20675255
NCBI-ProteinID:
XP_009547186
JGI:
Hetan2_440329
UniProt:
W4K3P5
LinkDB
All DBs
Position
Unknown
AA seq
397 aa
AA seq
DB search
MQTNDILEPTVRIRDLQSDRVNFVLENADLALANSMRRVMMADIPTVAIDMVEIHANTTV
LPDEFIAHRLGMIPLVSTNCDEAIRYNRDCTCARSCQNCSITLLLHVSCSDNRTMDITTN
HLDVVAQFEDEEPAGEELSKRSKNFGEPVGKGGDNPVLIGKIRKGQELKVRCVAKKGIAK
EHAKWSPCSAVSFEYDPHNRLRHTSYWYETDIKDEWPLSENAKEEEPPRDDELFDYNAKP
NKFYMEVETDGSLGPQEVVMKGLADLQLKLANLILGLKSDSLPSVDQQLAPTQQNGTGTN
GVPGGGWGASSSPGAGGWGGASGGGNGGAAGGWNAGGGAWGGSPAGGWAYGASGSPGSAP
GPNSGQGPASGAGSWGSTSPQRTGWGSPQQQASGWNV
NT seq
1196 nt
NT seq
+upstream
nt +downstream
nt
aaatgcagaccaacgacatcctcgagcctaccgtccgtatacgcgacctccaaagcgacc
gcgtcaattttgtccttgaaaatgcagaccttgcactggccaactcgatgcggagagtca
tgatggcagatatccctaccgtcgccatcgatatggttgaaatccatgccaacactaccg
ttttgcccgacgagttcatcgcacatcggctgggtatgatcccactcgttagcacgaact
gcgatgaggcaattcgttacaacagagattgcacatgtgcacgatcctgccaaaactgct
ctataacactgttgctgcatgtgtcatgtagtgacaataggacaatggatataacgacca
atcacttggacgttgtggcgcagttcgaggatgaggagccggccggtgaagaattgtcga
agcggtctaaaaactttggagaaccagtggggaaaggcggcgacaatccggtattgatag
gcaaaatacgaaagggacaggagctcaaagtgcgttgtgtagccaagaagggcatagcta
aggaacacgcaaaatggtcaccatgttctgctgtctccttcgagtatgaccctcacaaca
ggctccgacacacgtcatactggtatgagaccgatatcaaggacgagtggccgttgagtg
aaaacgcaaaagaggaagagccacctagggacgatgagttattcgactataacgctaaac
ccaataagttctacatggaagtggagacagatggcagtttgggaccacaagaggtggtca
tgaagggactggccgatttgcagctcaagctcgcaaacctcattcttgggctaaaatcag
acagtctgcccagtgttgatcagcagctcgctccaactcaacagaatgggacgggcacca
acggagttcctggaggtggatggggcgccagttcgtcgcccggcgccggcgggtggggtg
gtgcaagcggtggaggcaatgggggagccgccggaggatggaacgccggaggtggcgcat
ggggaggtagtccagctggtgggtgggcgtatggagcgtcgggtagtccagggtcagccc
cgggtccgaattcgggtcagggtccagcttccggtgcaggaagttggggtagtacgagcc
cgcagaggacagggtggggtagtccacagcagcaagcgagcgggtggaatgtgtga
DBGET
integrated database retrieval system
