Heterobasidion irregulare: HETIRDRAFT_443808 Help Entry HETIRDRAFT_443808 CDS       T03455                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism hir  Heterobasidion irregulare Pathway hir03013   Nucleocytoplasmic transport hir03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:hir00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     HETIRDRAFT_443808    03015 mRNA surveillance pathway     HETIRDRAFT_443808  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:hir03019]     HETIRDRAFT_443808 Enzymes [BR:hir01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      HETIRDRAFT_443808     5.6.2.5  RNA 5'-3' helicase      HETIRDRAFT_443808 Messenger RNA biogenesis [BR:hir03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      HETIRDRAFT_443808    mRNA cycle factors     Common to processing body (P body) and stress granule      HETIRDRAFT_443808 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 SLFN-g3_helicase ResIII Viral_helicase1 UvrD-helicase DEAD NPHP3_N Helicase_RecD AAA_22 nSTAND3 PIF1 ATPase AAA_16 PhoH SRP54 AAA_10 Zn_ribbon_RanBP Motif Other DBs NCBI-GeneID:  20675540 NCBI-ProteinID:  XP_009542998 JGI:  Hetan2_443808 UniProt:  W4KK71 LinkDB All DBs Position Unknown AA seq 1078 aa AA seqDB search MSIATRHSMPCDEGASRSIVYDSASSYGGMGIVDDTSSVYTANTSSHTPLDLESLSIIDD RSHVGSSASNGHTHALSQNGSVRLGVDEDFDAVLDDLKDDAQVDLPPHACSYCGIHNPAS VVKCLVCSKWFCNSRGNTSASHIVNHLVRAKHKEVILHAESPLGETTPECYNCGSKNVFM LGFIPAKSDTVVVLLCRQPCAAISKDISWNAALWAPLIDDRSFLSWLVKPPSETEQLRSR QISFSQINRLEDLWRENASATLEDLEKPGVDDEPQPIMLRYEDAYQYQNIFGPLVKIEAD YDKRLKESQTQTDITVRWDLGLNQKRVAWFGLPKLESGEVRLAVGDELRLRYSGELHKPW EGVGHVIKVPNNVSDEIGLELRRTEGVPHDITHNFSADFVWKSTSFDRMQLAMKTFAVDE KSVSGYIYHKLLGHELEPQVLRTQMPKRFSAPGLPELNHSQMFAVKSVLQKPISLIQGPP GTGKTVTSASIVYHLAKMNPGQVLVCAPSNVAVDQLTEKIHATGLKVVRLTAKSREALDS SVSFLTLHQQVANHTSHVELQKLIQLKNEQGELSSNDERKYKTLIRHCEKEILSAADVIC CTCVGAGDPRLSKLKFRTVLIDEATQAAEPECMIPLILGCKQVVLVGDHQQLGPVIMNKK AARAGLTQSLFERLVVLSNRPIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKN VDFPWPVPDTPMFFYQNLGQEEISSSGTSFLNRTEASNVEKIVTKFFKSGVVPGQIGVVT PYEGQRSYIVNYMQYNGTLKKDLYKEIEVASVDAFQGREKDYIILSCVRSNEHQGIGFLN DPRRMNVALTRAKYGVVILGNPKVLSKHPLWHYLLTHYKEKGCLVEGPLNNLQPSMIQFS KPRRTLSKSMDQFRRHDSSARELLNNVPMSSGTPSRFDASFYRTHDALNYIPSDVQSLRS QATYSSGLPIFAASGPFGAGMQRAVGGAKRGGYGSYASSIISQDGPADSSSSVVGPMDRV AYSQSDRLTRRTSFSSLAGTSEVGSMASAFDYKSQDDAADLDDVKSQYAATQSGVTAF NT seq 3237 nt NT seq  +upstreamnt  +downstreamnt atgtccattgctacgcgacatagtatgccgtgcgatgaaggggcctctaggagtattgta tatgactcggcctcatcttatggagggatgggcatcgtggacgacacttcgtccgtatac accgccaatactagcagtcacacgccgctggaccttgagagcctttcgattattgatgac cgctctcacgttggatcatcagccagcaacggccatacgcatgcactatctcagaatggt tctgttagactgggtgtggacgaggattttgatgctgtccttgacgatctgaaggacgac gcacaagttgatctgcccccacacgcgtgcagctactgtggcattcacaatccggcgtct gttgtcaaatgtctcgtatgctccaagtggttctgcaattctcgtgggaatacgtctgca tcgcacatcgtgaaccaccttgtgcgtgcgaagcacaaagaagttattcttcatgcagag agcccgcttggagaaacgactcccgaatgctacaattgcggtagcaaaaatgtctttatg cttggttttatacctgcgaaaagcgatactgtggtcgtgctgttgtgccgacaaccttgc gcagcaatctcgaaggacatctcctggaatgcagctctctgggcgcctctcatcgatgat cgctctttcctctcctggctagtcaagccgcccagcgagaccgagcagctccgctctcgc caaatctcattctctcagatcaaccgccttgaagacttgtggcgcgaaaatgctagcgcc accctagaagatttggaaaaacccggtgtagatgatgagccccagccgatcatgttgcgg tacgaggacgcgtatcaatatcagaatatcttcgggccgcttgtgaagatcgaagctgat tatgataagaggctcaaggaaagtcaaacccagacggatatcactgtgaggtgggatctg ggtttgaatcaaaaaagggtggcgtggttcgggctgccgaagttggaaagtggggaagtg aggttggctgtaggggatgaattgaggctcaggtattctggggagcttcataaaccttgg gagggtgtaggacatgtgatcaaagttccgaacaatgtctcggacgaaattggtctcgag ctacgtagaaccgagggcgttcctcacgatatcactcacaacttctctgcggatttcgtg tggaagtcgacgagctttgataggatgcagcttgccatgaaaacttttgccgtcgatgag aagagcgttagcgggtatatttatcacaaacttctcggccacgaactagagcctcaggtc ttgcgtactcagatgcccaagcgattctctgcccccgggcttccggagctgaaccattcg cagatgtttgcggtcaagagcgtcctacagaagcccatcagtctgattcagggccctcct ggcacgggtaaaaccgtcacatcagcttcgatcgtataccatcttgcaaaaatgaatcca ggccaggtgctcgtctgcgcaccatcgaacgtcgctgtcgaccaactcacggagaaaatt cacgctactggcctcaaagtcgtgcgcctgacagccaagtcgcgcgaggcgctcgactca tctgtgtctttcttgacgctgcatcaacaggtcgcgaaccacacttcgcatgtggaactg cagaagctcatccagctcaagaacgagcagggagagttgagctcaaacgatgagaggaag tacaaaacattgatccggcattgcgagaaggagatattgagtgccgcagatgtgatttgc tgcacttgtgtgggtgcgggagatccaaggttgagcaagttaaaattcaggacagtattg atagacgaagccacgcaggctgccgagccagaatgcatgatcccccttattctgggttgc aagcaagtcgtgctcgtaggagatcatcaacaactcggacctgttatcatgaacaagaag gcggcccgcgcgggtctcactcagtccctctttgaacgcttagtcgttctgagcaaccgc cctatccgtcttcaagtgcagtaccgtatgcacccgtgtctttcggagttcccttcgaac atgttctacgaaggaacgctgcaaaacggtgttaccgcgcctgagcgcctgcgcaaaaac gtagacttcccatggcctgtcccggacaccccgatgttcttctatcagaatcttggtcaa gaagaaatctcaagcagtgggacgtcattccttaacagaacggaggcttcaaatgttgag aagattgtcaccaagtttttcaaatctggtgttgtgccgggccagataggtgtcgtcaca ccctacgaaggccagcgctcgtacatcgtcaattacatgcagtacaacgggaccctcaag aaagatctctacaaggagattgaggttgcttccgtcgacgcattccaaggtcgcgagaag gactatatcattctcagctgtgttcggagcaacgagcaccagggcatcggtttcttgaac gaccccagacgtatgaatgtggcgctcactcgtgcgaaatacggtgttgttattctaggc aaccctaaagtcctgagcaagcatcctttgtggcactatctcctgactcattacaaggag aaaggttgccttgtcgagggacccctgaacaacctgcagcctagtatgatccaattcagc aagcccaggcgcacacttagcaagtcaatggaccagttccgccgtcatgactcaagtgcg cgggaattattgaacaacgtgccaatgagctccggaacgccgagccgctttgatgcatct ttctaccgcacacacgacgcactcaattacatcccctctgatgtccaatcattgcgctct caggctacctactcttctggtctacccatttttgccgcttctgggccatttggagcaggc atgcagcgggctgtgggaggcgcgaagcgcggtggctatggctcttatgcatcgtctatc atctcgcaggatggacctgcagacagctctagcagcgtggtaggcccaatggatcgcgtg gcatactcgcagagtgacagattgacacggcgcaccagcttttccagcttggcgggcacg tccgaagtcgggagcatggctagtgcatttgactacaagagccaggatgatgcggcggat ttggatgacgtgaagagccagtatgcagccacgcagagcggtgtgactgcattctga

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