Heterobasidion irregulare: HETIRDRAFT_448878
Help
Entry
HETIRDRAFT_448878 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hir
Heterobasidion irregulare
Pathway
hir03022
Basal transcription factors
hir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HETIRDRAFT_448878
09124 Replication and repair
03420 Nucleotide excision repair
HETIRDRAFT_448878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hir03021
]
HETIRDRAFT_448878
03036 Chromosome and associated proteins [BR:
hir03036
]
HETIRDRAFT_448878
03400 DNA repair and recombination proteins [BR:
hir03400
]
HETIRDRAFT_448878
Enzymes [BR:
hir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HETIRDRAFT_448878
Transcription machinery [BR:
hir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HETIRDRAFT_448878
Chromosome and associated proteins [BR:
hir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
HETIRDRAFT_448878
DNA repair and recombination proteins [BR:
hir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HETIRDRAFT_448878
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DUF4932
Motif
Other DBs
NCBI-GeneID:
20675892
NCBI-ProteinID:
XP_009542728
JGI:
Hetan2_448878
UniProt:
W4KJ92
LinkDB
All DBs
Position
Unknown
AA seq
1328 aa
AA seq
DB search
MSTSKRIRIPSLKAREALYQDQPDPAQPPSVRRKATKRRASEPADDDLSPADNEYDDPHP
HPHPHSKRARTTESLDDDMDVDIDGDGDGDVAPLDEDPGYLSDAAHSAKHARLSRASSSA
SQRRERPKSRKERTPVVVTPAPSSSKTRKKRHVVYSDDEDPFEDAVGYRDAKDVDIDDDG
DDDEEEPEPAAKRLPTVRLKLGKAGGDAKGKEKAGKSATKEREEHTPPAPKRAKLRDPSP
EIDEQDAAAAPAPAPAAPEAQKDAGPTPLPSFKKRKLPPIKKNKPAGASTSSAHPSQVPA
AKARPRPAEGAKAGEAGEADDGLPVLKKPAQRAGNVEVDLSNKDIYASLFKSVRAPARVC
FVADGGLFFTQAGASTPRSGLNKNQKEERRKELDKLRDADRARRVAEAERAFDLRGQYDK
IATFVDRLGARRSSAMWPNIMAAAWRYEKEKEEKRRERDRVREKSVRERENGEVVDERGS
DLSRDQGGGGGAATHVWMDAGGRHGASQAAPAMKFYIDDLPIVFPYDRIYPEQYAYMCDL
KRTIDATGHCVLEMPSGESSRSLSLSLSRARAPHLTRTQFFPVKRKLVYCSRTVPEIEKA
LSELKRLMEYRVAVAESDDDRRKEQAFTGIGLTSRKNLCIHPEVAKEKKGKVVDARCRDL
TNSAVCERARNDPGSVETCGFHDNLGDMEAGQLIPPGIWTLADVLQNGRDKGVCPYFTVR
RMMPFVDIVIYSFHYLLDPKVAEQVSKDISKDAIVVFDEAHNIDNVCLESLSIDLTRPML
DSASRSVNKLADKINEIKQTDASKLQDEYAKLVEGLQEAAADEDAFMSNPVLPEDLLTEA
VPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFLQHLKDITYIERRPLRFCAER
LQSLVKTLELSRIDEYAALQKVASFATLVATYEKGFLLILEPFETENATVPNPIFHFVCL
DPAIAIKPVFERFSSVVITSGTLSPLDMYPKMLQFTPVVQETYAMTLTRNSFLPLARPAD
QVAISSRFEVRNDPAVVRNFGTILVEYSKIVPDGVVAFFPSYLYMESIVAAWNDMGILNE
VWKHKLIFVETPDANETSIALENYRRACDNGRGAVLLSVARGKVSEGIDFDHNYGRAVIM
VPYQYTESRILKARLEYLRDAYRIRESEFLGFDAIRNAAQCVGRALRGKTDWGLMVFADK
RFARADKRAKLPRWINQYITETAANLSTDMALSLSKLFMRTISQNAGENLTGVSLWTLED
VRKAQAAQREAAAEAEAARAAMERAAAEAEGGGTMDVDEDDEEDEEYGDGGFSDRMLQDA
GTVDGYTD
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgtccacctccaagcgaatccgcattcccagtctcaaggccagagaggccctctaccag
gaccagcccgaccccgcccagccgccctccgtccggcgcaaggccaccaagcggcgcgcc
tccgagcccgcagacgacgacctgtcccccgccgacaacgaatacgacgacccgcacccg
cacccgcacccgcacagcaagcgcgcgcgcacgacagagtcgctcgatgacgacatggac
gtcgacattgatggcgacggcgacggcgacgtcgccccgctcgacgaggaccccggctat
ctctccgacgccgcccactcggccaagcacgcccgcctgtcccgcgcctcctcctccgcc
tcccaacggcgcgagcggcccaagagccgcaaggagcgcacacccgtcgtcgtgacgccc
gcgccctcgtcctccaaaacccggaagaagcggcacgtggtctactcggacgacgaggac
ccgttcgaggacgccgtcggctaccgcgacgccaaggacgtcgacatcgacgacgatggc
gacgacgacgaggaggagcctgaacccgccgcgaagcgcctcccgacggtgaggttgaag
ctgggcaaggccggaggcgacgcaaaaggaaaagaaaaggccggcaaatcggccacaaaa
gagagggaggagcacacccctcccgcgcccaagagggcaaagctccgggacccctcaccc
gaaatcgacgagcaggacgccgcggcggcgcccgcgcccgcgcccgcggcgccggaagcc
cagaaggacgcagggcccacgcccttgccgtcgttcaagaaacgcaagctgcctccgatc
aagaaaaacaagccggcgggcgcgagcacctcctccgcgcacccgagccaggtgcccgcg
gcgaaagcgcggcccaggcccgccgagggcgccaaggcgggcgaggcgggcgaggcggac
gacgggctgcccgtgctgaagaagcctgcgcagcgggcggggaacgtcgaggtggacctg
agcaacaaggacatctacgcgtcgctgttcaagagcgtacgtgcccccgcgcgggtttgt
ttcgtagctgacggcgggctgtttttcacgcaggcgggggcgagcacgccgcggtcgggg
ctgaacaagaaccagaaggaggagcggcggaaggagctggacaagctgcgggacgcggat
cgtgcgcgccgggttgcggaagccgagcgggcgttcgacctgcgggggcagtacgacaag
atcgcgacgttcgtggaccggctgggggcgcggcggagctctgcgatgtggccgaacatc
atggcggcggcgtggcggtacgagaaggagaaggaggagaagcggcgggagagggaccgg
gtgcgggagaagagcgtgcgggagcgcgagaacggcgaggtggtggacgagcgcgggtcg
gatctgtcacgggaccaggggggcggtggcggtgcggctacccatgtgtggatggacgcc
ggcggcaggcacggtgcgagccaggctgctcccgccatgaagttctacatcgacgacctc
cccatcgtcttcccctatgaccggatataccccgagcaatatgcgtacatgtgcgatctc
aagcgcaccatcgacgcaacgggccactgcgttctcgagatgccctcgggcgagtcctcc
cgctctctctctctctctctctcgcgcgcgcgcgcgccgcatctcacccgcacccagttc
ttccccgtaaagcgcaagctggtctactgctcccgcaccgtccccgagatcgaaaaggcc
ctctccgagctcaagcgcctcatggagtaccgcgtcgccgtcgcagagtccgacgacgac
cgcaggaaagagcaggccttcaccggcatcggcctcacaagccgcaagaacctctgcata
caccccgaggtcgccaaggagaaaaagggcaaggtcgtcgacgcgcgctgccgcgatctc
acgaactccgccgtctgcgagcgcgcgcggaacgacccgggctccgtcgagacctgtggc
tttcacgacaacctcggcgacatggaggccggccagctgatcccgcccggaatatggacg
ctcgcggacgtcctgcagaacgggcgcgacaagggcgtctgcccgtacttcaccgtgcgg
agaatgatgccgttcgtcgacatcgtgatctactcgttccactacctcctcgacccaaag
gtcgcggagcaggtgtccaaggacatttccaaagacgccatcgtcgtcttcgacgaggcg
cacaacatcgacaacgtctgcctcgagtctctgagcatcgacctcacgcggccgatgctc
gactccgcctcgcgcagcgtcaacaagctcgcggacaagatcaacgagatcaagcagacc
gacgcgtcgaagctgcaggacgagtacgcgaagctcgtcgagggcctgcaggaggcggcc
gcggacgaggacgcgttcatgagcaacccggtgctgccggaggacctgctcacggaggcc
gtcccgggcaacatccgcaaagcggagcacttcgtcgccttcctcaagcgcttcgtcgaa
tacctcaaaacccgcatgcgcgtgctacacgtcgtcgccgagacgccgctgtcgttcctg
cagcacctaaaagacatcacgtacatcgagcgcaggccgctccggttctgcgcggagcgc
ctgcagtcgctcgtcaagacgctcgagctgagccggatcgacgagtacgcggcgctgcaa
aaggtcgcgagcttcgcgacgctcgtggcgacgtacgagaaagggttcctgctgattctc
gagccgttcgagaccgagaacgcgacggtgccgaacccgatcttccatttcgtctgcctc
gacccggcgatcgcgatcaagcccgtgttcgagcggttcagcagcgtcgtgatcacgtcc
gggacgctctcgccgctcgacatgtacccgaagatgctgcagttcacgcccgtcgtgcaa
gagacgtacgcgatgacgctcacgcgcaactcgttcctccctctggcacgtcccgccgac
caggtggcgatcagctcgcggttcgaggtgcgcaacgaccccgccgtggtgcgcaacttt
ggcacgatcctcgtcgagtacagcaagatcgtcccggacggcgtcgtcgcgttcttcccg
agctacctgtacatggagtcgatcgtcgccgcgtggaacgacatggggatcctgaacgag
gtgtggaagcacaagctcatcttcgtcgagacgccggacgcgaacgagacgagcatcgcg
ctcgagaactatcgccgggcgtgcgacaacgggcgcggcgcggtcctgctgtccgtcgcg
cgcgggaaggtctccgagggcatcgactttgaccacaactacgggcgcgcggtcatcatg
gtgccgtatcagtacacggagagccggatcctcaaggcgcggctcgagtacctgcgcgac
gcgtatcggatccgggagtcggagttcctcgggttcgacgcgatccgcaacgcggcgcag
tgcgtcgggcgggcgttgcgcggcaagacggactggggcctgatggtgttcgcggacaag
cggttcgcgcgggcggacaagcgggcgaagctgccgcggtggatcaaccagtacatcacg
gagacggccgcgaacctgtcgacggacatggcgctctcgctctcgaagctgttcatgcgc
acgatctcgcagaacgcgggggagaacctgacgggggtgtcgctctggacgctcgaggac
gtgcgcaaggcgcaggcggcgcagcgagaggcggctgcggaggcggaggcggcgcgggcg
gcgatggagcgcgcggccgcggaggcggagggcggggggacgatggacgtggacgaggat
gacgaggaggacgaagagtacggggacggcgggttctcggacaggatgttgcaggacgcg
gggacggtggacggctatactgactga
DBGET
integrated database retrieval system
