Heterobasidion irregulare: HETIRDRAFT_450585
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Entry
HETIRDRAFT_450585 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K14962
COMPASS component SWD2
Organism
hir
Heterobasidion irregulare
Pathway
hir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HETIRDRAFT_450585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_450585
03036 Chromosome and associated proteins [BR:
hir03036
]
HETIRDRAFT_450585
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
HETIRDRAFT_450585
Chromosome and associated proteins [BR:
hir03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
HETIRDRAFT_450585
COMPASS/SET1 complex (yeast)
HETIRDRAFT_450585
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
20676061
NCBI-ProteinID:
XP_009545165
JGI:
Hetan2_450585
UniProt:
W4KAP1
LinkDB
All DBs
Position
Unknown
AA seq
246 aa
AA seq
DB search
MSSSMDHTVRLWDLRAPTCRGLLNLPAPSIVAYDSSGVVFAIAVNHYSRILLYDHANFDK
APFLTITLEDPTLSLVSYPPRAIYITSMAFSSSGKYLLIGCSGDAHYVMDAFEGHLLAKL
EGHVGLERRRLDAPQGIEPQRGCSGEEVSWTPDSNYVLGGSLDGRVCVWDLQNLQTKTGA
IDLKAPPLRLQPIAKMDGHPSPSRCLKFNPRLAMMCTAGAELAFWLPDQSADVDEVAKEL
LKKPPT
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatctatggaccacaccgtgcgactgtgggacctccgagctccgacatgtcgc
ggtctgcttaaccttccggcaccctccatagttgcctatgacagtagtggtgtcgtcttc
gccattgctgtcaaccactactcccgtatccttctctacgatcacgccaactttgacaag
gcaccgtttcttaccattactctggaggatccgacgctttcgctcgtcagctatccgcca
cgcgccatctatatcacatctatggcgttctcaagcagcggcaagtaccttttgattggc
tgctctggagatgcgcactatgtgatggatgcgtttgagggtcacctgcttgcgaagcta
gaagggcatgtggggcttgaacggaggcgattagatgccccacagggcattgagccccaa
cgaggatgcagtggcgaggaggtgtcgtggacacctgatagcaactacgtattaggcggt
agcttggatggacgggtatgcgtttgggacttgcagaatttgcagacaaagaccggcgcc
attgatttgaaggcaccaccgttgcgattgcagcctatcgcaaagatggatggacatcct
agcccttctcggtgtctcaagttcaaccctcgactggcaatgatgtgtactgcgggtgcc
gaactagcgttttggctaccagaccagtctgcggatgtggacgaggtggcaaaggaattg
cttaaaaagcctcctacctga
DBGET
integrated database retrieval system