Heterobasidion irregulare: HETIRDRAFT_477311
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Entry
HETIRDRAFT_477311 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:
2.7.7.6
]
Organism
hir
Heterobasidion irregulare
Pathway
hir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HETIRDRAFT_477311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hir03021
]
HETIRDRAFT_477311
Enzymes [BR:
hir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HETIRDRAFT_477311
Transcription machinery [BR:
hir03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
HETIRDRAFT_477311
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
20677734
NCBI-ProteinID:
XP_009548286
JGI:
Hetan2_477311
UniProt:
W4K2Z8
LinkDB
All DBs
Position
Unknown
AA seq
1142 aa
AA seq
DB search
MAETDDHEEWSQLNQTDWRGLGLTDPIKNVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDV
DIKNILKANNKVTSDVDPRFWLKYTDIHVGFPDRTDADAIDKSVTPHECRLRDTTYSAPI
LVTIQYTRGRSVVRRANVNIGRLPIMLRSNKCVLTGRTEAQLARMTECPLDPGGYFVVKG
TEKVILVQEQLSKNRIIVETDPVKGVVQSSCTSSTHGGLKSKTYVATKKGKIYLRHNSIH
EDVPIVVALKALGIQSDKEILLLTAGNSEAYKNSFAPNLEDAARLGIFTRHQALEWIGSR
VKVNRRVAGPRRPAWEEALEALATIVLAHVPVVGLDFRSKAIFVATMTRRVLMAVDDEKM
VDDRDYVGNKRLELAGQLLALLFEDLFKTFNTNLKSAIDKVLKKPSRTNEFDAWNTMQFQ
GDHITAGFVRAISTGNWSLKRFRMDRAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSG
PRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIKVAYMLGVEDISQAT
GTEIYGPNAFVVNVNGTIMGLTRFPTRFVHNFRRLRRAGRVSEFVSVYINHHHHTVNIAS
DGGRICRPMIIVDNGQPMVTSEHISLLKQGKLEFDDFLRRGLVEYLDVNEENDSYIALYE
PDVTPTTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDT
LLYLSVYPQQPMVKTKTIELVGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYG
RCQVLRKNATLIRKYPNGTFDRLADAPADENGQIQKKFDIIQLDGLAGVGERVDPGDVYI
NKQSPTNANDNSFTGQAASVPYKNAPMTYKSPVAGHIDKVMISDTENDQTLIKVLIRQTR
RPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLSG
KAGVLAGKLQYGTAFGGSKVEDMSRILIDHGFSYAGKDMLTSGITGEPMEAYVYFGPIYY
QKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLM
ISSDKFEVNACQDCGLLGYNGWCPFCKSSKKMAQLTIPYAAKLLFQELMAMNVVPRLVLD
DA
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggcagagactgatgatcacgaagagtggagtcagttaaatcaaacggactggcgcggc
ctaggcctgactgacccaatcaaaaatgttgaggacaaatggctcttgctgccagccttt
ttgaaggtcaaaggtctggtgaaacaacacattgactctttcaattacttcgtggacgtc
gacatcaagaacatattgaaagccaataacaaggtcacgtccgatgtggatccccggttt
tggctgaagtatacagatatccatgttggtttccctgaccggacggatgccgacgctatc
gacaagagtgtcaccccccacgaatgtcgcttgcgcgacaccacatatagcgcgcccatc
cttgtcaccatacagtacacgagaggtcgcagtgtggtgcgccgagccaatgtgaacatc
ggtcgcctgcctatcatgcttcgaagcaataaatgcgtacttacggggcgcacggaagct
cagttagctcgtatgactgaatgcccgctagatcctggcggctacttcgttgtaaaggga
acagagaaggtcattttggtgcaggagcagctaagcaaaaatcgtatcattgtggagaca
gatcccgtcaaaggtgttgttcaatcttcatgtacatcatccacacatggcgggctgaaa
tcgaagacctatgtcgccaccaaaaaggggaaaatataccttcggcacaattctatacac
gaagatgttcccattgtcgtcgctttgaaagcactcggcatccaatctgacaaggagatc
ctcctcctaactgccgggaattcagaagcgtataagaactccttcgctcccaatctggag
gatgcggcccgtctgggaatcttcacgcgtcatcaggccttggagtggatagggagtcgc
gtgaaggtaaatcgacgagttgctggtccgcgaaggcctgcgtgggaggaggctctcgaa
gcgctggctacgattgtattggcacatgtgcctgtcgtgggcttggacttcaggtctaag
gctatctttgtcgcaacaatgacacgacgcgtcttgatggctgtggacgacgagaagatg
gtcgatgaccgcgactacgtgggaaacaagcgattggaacttgctggtcaattactggct
ctactgttcgaagatctctttaagaccttcaacactaatcttaagtccgcgatcgacaaa
gttcttaaaaaaccttcgcgaaccaacgaattcgatgcatggaacaccatgcaattccag
ggcgatcacatcactgcgggttttgtacgcgccatctcgacggggaactggtcactcaag
cgtttccgtatggaccgagccggcgtcacacatgtcctttcgcgcctgagttttatctca
gcactaggaatgatgacacgtatctcttctcagtttgagaagacgcggaaggtcagcgga
cctcgtgcactgcagccaagtcagtggggtatgttatgccctagtgatactcctgaagga
gaggcatgcggcttggtcaaaaatctagcgctgatgacacatataacaaccgatgtagag
gaggagcccatcatcaaggttgcatacatgcttggcgtggaggatatcagccaggctact
gggacagagatctatggccctaatgccttcgttgtcaatgtgaatggaaccatcatgggt
ctcactcgtttcccgacccgcttcgtccataatttccgtcgccttagacgcgcagggcgg
gtcagtgagtttgtcagcgtctacatcaatcatcatcaccatacagtcaatattgccagc
gatggaggacggatatgtaggcctatgatcatcgtggataacggacagcctatggtcacg
tctgagcacatttcgctactaaaacagggcaaattggagttcgatgatttcttgcgacgc
ggtctcgtcgaatatctagacgtgaacgaagagaacgactcttacattgctctatacgaa
cccgatgtcactccaacaacgactcacctcgagatcgaaccttttactatccttggagcg
gtcgccggactcattccctacccccatcacaatcaatctcctcgcaacacttaccaatgt
gctatgggtaaacaagcaatcggtgctataggctacaaccaattcaatcgtatcgacacc
cttctttacctgtccgtatatccacaacaaccaatggtcaagacgaaaaccatcgaattg
gtagggtatgacaaacttcctgcgggacagaatgctacagtggctgtcatgagctattca
ggttacgatatcgaagatgcattgattctcaataaggccagcctggacagaggatatggg
cgatgccaagttcttcgcaagaacgcaacgcttatccgtaaatatcccaatggaacgttc
gatcgattggcagatgcgccagcggatgaaaatggacaaattcaaaagaaatttgacatc
attcagcttgatggtcttgctggtgtcggcgaacgcgttgatcctggggatgtctatatc
aacaagcaatcaccaaccaacgccaacgataactccttcaccggccaagcggcctccgta
ccgtacaaaaatgctccaatgacctacaagtcgcctgtcgctgggcatattgacaaggtc
atgatatcagatacggagaatgaccagaccttgatcaaggtcttgatccgacaaacgagg
agacctgagctcggcgacaagttttcatcaaggcatggtcagaagggcgtttgtgggctg
atcgtgaatcaagaggacatgccattcaacgatcaggggattgttcctgataccatcatg
aaccctcacggtttcccctcacggatgacagttggtaagatgatagaactgctttcaggg
aaggcgggcgttctagccggaaaacttcagtatggtacagcgtttggaggatcgaaggtg
gaagacatgtcaagaattcttatcgatcacgggtttagctacgctgggaaggacatgctt
accagcggtatcaccggcgagcctatggaagcatatgtatactttggaccgatatactat
cagaaactcaaacacatggtgatggacaagatgcatgcccgagcaagaggaccacgtgca
acgctaacacgacagcctaccgaaggtcgttcccgagagggtggtctgcgccttggcgag
atggagcgagactgccttatcggctatggcgcgacgcaattgctcctcgagcgcctgatg
atttcatccgacaagtttgaagtcaatgcttgccaggattgtggtctgttgggatacaat
ggctggtgcccattctgcaagagctccaagaagatggcgcagctcactatcccttacgct
gcaaaactacttttccaggagctaatggccatgaacgtcgtcccacgtttagttctcgac
gatgcatga
DBGET
integrated database retrieval system