Heterobasidion irregulare: HETIRDRAFT_480120
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Entry
HETIRDRAFT_480120 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K14308
nuclear pore complex protein Nup54
Organism
hir
Heterobasidion irregulare
Pathway
hir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
HETIRDRAFT_480120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_480120
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
HETIRDRAFT_480120
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nucleoporin_FG
Nup54_C
Motif
Other DBs
NCBI-GeneID:
20677897
NCBI-ProteinID:
XP_009550968
JGI:
Hetan2_480120
UniProt:
W4JWJ8
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MNNQAQQQQQQQQQQQQQPAAGGGLFGQSNANAAQPAATGGLFGTNANTGGQPATGGGLF
GTSTAAPATGGGLFGTNTAQQPATGGGLFGTGVAQQPATGGLFGTNTNAAQPTTGGGLFG
SNAAQPATGGGLFGTSNTTQQQQPATGGGLFGTSITTQPTTGGGLFGITNQNNQQQPAAP
SGGPFGTNPSASNTTSGGLFGNNPNVGTSTPIGGGGLFGSVRAPQGTGTLFGAAGAQTQQ
PQASSSLLSSTTQPQGSGLLGGSLLGTRFGGGPMLGSLFANKGTTVPAQQQADAQTQFAQ
LQQRIEGVFHAYKPDSPLNRFQHYFYNLVDPAQVHLYGRPANATNEALWQKAVRENPDPS
CLVPVLATSFDDLQKRVEAQANQASLHQQKLKELQSQIEKLSERHELSNASRLHRATSAQ
TQLTHRLLKLVQHLHLLIPALRSSSIRPEEEALRAALEEIDGEIRRPGGMSRIVGKLNEL
WAVVGALSAVRGGNSRLNGSADGVSWAVVDEDGLNHIVQILAEQQAGLAHLTKILQKDMK
DVAVIYGEGEDVQRPEESGRSDLLSSFSQTLRGSTLR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatcaggcgcaacaacaacaacagcagcaacagcagcaacagcaacagccagca
gctggtggaggtctctttggacaatccaatgcgaacgcagcgcagccagcggccactgga
ggattgtttgggacgaatgcgaatacgggagggcaacctgctactggtggtggattattt
gggacgagcacggcggcacccgcgactggaggtgggttgtttgggacgaacacggcacaa
cagcctgctactggaggcgggttgtttgggacgggtgtggcacagcagcctgctactgga
ggtctcttcggtacgaacacaaatgcggctcagcctaccactggcggtgggctctttggg
tctaacgcggcacaaccagcgacgggcggaggactgtttggtacaagcaacacgacccag
cagcagcagcctgctactggtggtggactctttggcacgagcataacaacgcagccgaca
acagggggtggtctgttcgggataaccaaccagaataaccaacagcagccggcagctcct
agcggaggtccctttggtacaaatccttcggcttcgaacacgaccagcggcggtctgttc
ggaaataatccaaatgttgggacatcaacacccattggtggcggcggcctttttgggtcc
gtacgagctccgcaagggactggcacgctctttggggccgcaggcgcgcagacacagcag
ccacaggccagttcgtcgctgctcagctcaaccactcaaccgcaagggtcggggttactt
ggtgggagcctgttaggcacgaggttcggtggtggcccgatgttgggtagcttatttgcg
aacaagggcactactgtgccagctcagcagcaggcggatgctcagacacagttcgcacaa
ctgcagcagcggattgaaggcgtctttcacgcttacaaacctgattcccctctgaatcga
ttccagcattacttttataacctggtagatcctgcgcaggtgcatttatatgggcggcct
gcgaatgccacgaacgaggcgctatggcagaaggccgtccgcgaaaacccggatcctagt
tgtctcgtccctgtcctcgcgacgagcttcgacgacttgcagaagcgagtagaagcgcag
gcgaatcaggcgagcttgcaccagcaaaagctcaaggagctgcaatctcaaatcgagaaa
ctctccgagcgacacgagttgtccaacgcctcgcgtctacaccgggccacgtccgcacag
acgcagctgacgcatcggcttttgaagctcgtgcagcacctgcacctgcttatccccgca
ttgcgatcatcgtcgatacggcccgaggaagaggcgttgcgggcggcgctggaggagatc
gacggcgagatccggcggccgggcgggatgagcaggatcgtcggaaagttgaacgagctg
tgggcggtggtcggcgcattgagcgcggtgcgcggtgggaattctcggctgaacgggtcc
gcggacggggtgtcgtgggcggtcgtggacgaggatggtttgaatcacatcgttcagatt
ctggccgagcagcaggcaggacttgcgcacttgacgaagattttgcagaaggatatgaag
gacgttgctgtcatttacggggaaggagaggatgtgcagcggccggaggagtctgggcgg
tcggatcttttatcgagcttttcacagacgctgcggggaagcacattacgttag
DBGET
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