KEGG   Heterobasidion irregulare: HETIRDRAFT_57322
Entry
HETIRDRAFT_57322  CDS       T03455                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
hir  Heterobasidion irregulare
Pathway
hir03018  RNA degradation
hir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    HETIRDRAFT_57322
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HETIRDRAFT_57322
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hir03019]
    HETIRDRAFT_57322
   03041 Spliceosome [BR:hir03041]
    HETIRDRAFT_57322
Messenger RNA biogenesis [BR:hir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     HETIRDRAFT_57322
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     HETIRDRAFT_57322
Spliceosome [BR:hir03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    HETIRDRAFT_57322
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 20678392
NCBI-ProteinID: XP_009553064
JGI: Hetan2_57322
UniProt: W4JMX3
LinkDB
Position
Unknown
AA seq 120 aa
LPLSLLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREVYQTSADGDRFWKVKECYI
RGSTIKYLRVPDTLLDAVKEEQARAREAGKSARGAHISGAGRGMPRGGPMRGRGGRGRGM
NT seq 363 nt   +upstreamnt  +downstreamnt
ctcccactatcgctcctcaatgcggcgcaaaataagcctatgctggtcgagctgaagaat
ggagagacattcaacggacatcttattaactgcgacaacttcatgaacatcacgctgcgt
gaggtgtaccagacgagcgcggacggcgaccggttctggaaggtcaaagagtgctatatt
cgcgggagcacaatcaaataccttcgcgtgccggataccttgctggacgcggtgaaggag
gagcaggcgcgcgcgcgcgaagccgggaagagtgcacgaggtgcacatattagcggcgcg
ggacgcggcatgccacgcggcgggccaatgcgtggtcgcggcgggcgtggacggggtatg
tga

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