Heterobasidion irregulare: HETIRDRAFT_60335
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Entry
HETIRDRAFT_60335 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
hir
Heterobasidion irregulare
Pathway
hir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
HETIRDRAFT_60335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hir03009
]
HETIRDRAFT_60335
Ribosome biogenesis [BR:
hir03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
HETIRDRAFT_60335
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Utp21
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
WD40
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
WD40_Gbeta
ANAPC4_WD40
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_NOL10_N
WDR90_beta-prop_4th
Beta-prop_CAF1B_HIR1
ASA1
Beta-prop_VPS8
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
DSE1_N
PEP5_VPS11_N
PROPPIN
Beta-prop_ACSF4
Hira
Beta-prop_pof12
Beta-prop_WDR35_2nd
Motif
Other DBs
NCBI-GeneID:
20678508
NCBI-ProteinID:
XP_009541839
JGI:
Hetan2_60335
UniProt:
W4KKU5
LinkDB
All DBs
Position
Unknown
AA seq
938 aa
AA seq
DB search
MVGVVAAESEARSPPPRKRIRPLSSHPSDDAERQKSSSPRLFAPFRALGLVTNHVPFALQ
TRSFKGSTDGPRIHLLTCIGRSWVLWEGGKMGLLFVGPDTAEPISAMAMDGDAVWAAAGP
RVLKYVRGKEILRLNNPLGAHIASILVFGSQLLALTEDGGRLLMWDTSKEEFQTQIQFEA
GFVATHMMHPATYLNKIIVASSNGSLQMWNIRTQTCIHKFLHNNLLASSTSNAATAITAL
AQSPAIDVVGIGFTSGEISIYDIRANEGFMRIFMREGGIRALSFRTDGHPVLASASETGH
ISLWDLSAKGRLLHTVRGAHDGGITALEWVPGQPVLVSSGEDNSVKQWLFDSPTSAPRLL
KYRSGHNAPPHLIRFYGEDGKQLLTASRDRSLRCTSLVRDSRSFELSQGSLTKKASTLSV
PVASLKLPLITSLSYSTTRWKDWDDIMTAHTGETFARTWSMLHKKKGNHALGLGSTEKGK
PVGSVKAVCVSACGNFGIASSSTGAITMWNMQSGMQRKVFSIGPYPDERSITGLATDALN
RILIASTLDGTINFFDFHTTALEKTLVLPSAAVSITLHRDSGLLAVICDDLAVRLVDIET
RRIVREFGGFGGRVLDMTFSPDSRWVITTSLDSIIRTFDIPTGHLIDAFRTSSVATSVSF
SPASDFLATAHVDSVGVFLWANRAQYSDFSFHNITEEDTADIALPTMQASTDDNDTLELL
SALTVEDQHQTHFTTPQDLDGDLVTLTLLPRSRWQSLLNLEVIQQRNKPKEPPKPPEQAP
FFLPTLPGIEHRFEIQQKDTKADQRTRRLEKATAESESVFFKRLSEADKDSDYDAFFSYA
KSLSAAAVDLELRSLVSLDSLQAFLHALSQRLRSHRDFEAVQTYLNVFLRMHGDVMVANV
TLRAELQKLLGIQKRESGRVLELIAASLGTLAFVRDTL
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggtaggcgttgttgctgccgagtctgaggctcgtagtcctcctcctcgcaaacgtatc
cgcccactctcttctcacccatccgacgacgccgaacgtcagaaatcaagcagcccccgt
ctttttgcacccttccgggcccttggtctcgtcacaaaccacgttccatttgctcttcag
acacgttcattcaaaggatccacagacgggcctcgtatccatctcctaacatgcattgga
aggtcatgggtgttatgggaaggtgggaagatgggattgttatttgttggtcctgatacc
gctgagccaatatcagctatggccatggatggggatgccgtttgggccgctgccggaccc
cgcgtgctgaagtatgtccgaggcaaagagatattacggttaaacaatccgctgggagcc
cacatagcgtctatcctcgtgtttggatcacaactactggctttgacggaagacggaggg
cgcttgctaatgtgggatacctcaaaagaggaattccaaacacaaattcaatttgaggca
ggcttcgttgcaactcatatgatgcatcctgccacatatttaaacaaaatcattgtagcg
agcagcaacggtagtttgcagatgtggaatatacggactcaaacatgtatccataagttt
ctacataacaatcttttagcttcctccacatcgaatgcagcaacggccatcacggctctc
gcacagtctcctgcaatcgacgttgttggtatcggttttacctccggcgaaatttcgata
tacgacattcgtgccaatgaggggtttatgcgaattttcatgcgagagggcggtattagg
gctttgagttttaggactgacgggcaccctgtgctggcctcggcatcagaaaccgggcac
atatccctttgggatctcagcgcaaaaggccgccttctgcatactgtgcgaggtgcacat
gatggcgggatcactgcgttggagtgggtacctggccagccagtacttgtcagctcggga
gaagacaacagcgtgaagcaatggctttttgactcaccgacatctgctcctcggttgctc
aaatatcgatctggccataatgcccctccgcaccttattcggttttacggagaggatggt
aaacagttgttgactgcctcaagggatcgtagtcttcgatgtacctcccttgttcgagac
tcgcgatcattcgaattatcccaaggctcgttgacgaaaaaggcatccacactatctgta
cccgtcgcttccttgaagctcccccttatcacctctttatcttattccacgactagatgg
aaggactgggacgatatcatgacagcacatacaggagaaacctttgccagaacgtggagt
atgctgcacaagaaaaaaggaaaccatgctcttgggcttgggagtactgaaaagggcaag
ccagttggctctgtcaaggctgtatgcgtatctgcgtgtggcaatttcggcattgcgagt
tcttctacaggtgctatcactatgtggaatatgcagtctggcatgcagcgtaaagtattt
agcatcggaccatatcctgacgaaaggagcatcactggtcttgccaccgatgcactgaat
cgtattctgattgcgagtacgctggacggaactatcaacttttttgatttccataccacg
gctctagaaaaaacgttggtcctaccaagcgctgctgtatctattactttgcacagggac
agcggtctgctcgctgtcatatgtgatgacttggcagttcgactcgtcgatattgaaact
cgtagaatagttcgagagtttggtggatttggtggacgcgtgttggacatgacgttctcc
cccgactcaagatgggttatcaccacatcgttggactctatcatccggacgtttgacata
ccgactgggcacctcatcgatgccttccgaacatccagtgtggcaacaagcgtgtcattt
tcacctgctagtgatttcttggccacagcccatgtggacagcgttggcgtgtttctgtgg
gcgaatcgcgcgcagtactcggatttctcattccacaacatcaccgaagaggacactgca
gatattgctcttccaacgatgcaggcatctactgacgacaatgacacgctggagttgttg
tctgcactcacggtggaagaccagcatcaaacccacttcactacacctcaagacctcgat
ggtgatctcgttaccctcacgcttctgccccgttcgcgatggcaatcattgttgaatctg
gaagttattcagcaacgtaacaaaccaaaagagccaccgaagcccccagaacaggctccc
ttttttctgccgaccctcccaggcatcgaacacagattcgagatacagcagaaggataca
aaggctgaccaacgtactcgaaggctcgagaaggccacagcagaatccgagagcgtcttc
ttcaagcgactctcggaagctgacaaggacagcgattacgacgcttttttcagctatgca
aaatcactttctgcagcagccgtggatctcgaacttcgatctcttgtttccctcgactca
ctacaggcattcctccatgcactcagccaacggctgcgttcgcatcgtgatttcgaagct
gtgcagacgtacctgaacgttttcctgcgtatgcatggagatgtcatggtcgccaatgtt
acattacgagctgaattgcagaagctgttggggatacagaagcgggagagcggccgcgtt
ctagagctgattgcggcgtcactgggcacactagcatttgttagagatacgttgtag
DBGET
integrated database retrieval system