Heterobasidion irregulare: HETIRDRAFT_61689
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Entry
HETIRDRAFT_61689 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
hir
Heterobasidion irregulare
Pathway
hir03022
Basal transcription factors
hir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HETIRDRAFT_61689
09124 Replication and repair
03420 Nucleotide excision repair
HETIRDRAFT_61689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hir03021
]
HETIRDRAFT_61689
03400 DNA repair and recombination proteins [BR:
hir03400
]
HETIRDRAFT_61689
Transcription machinery [BR:
hir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HETIRDRAFT_61689
DNA repair and recombination proteins [BR:
hir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HETIRDRAFT_61689
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
20678566
NCBI-ProteinID:
XP_009546964
JGI:
Hetan2_61689
UniProt:
W4K5F5
LinkDB
All DBs
Position
Unknown
AA seq
593 aa
AA seq
DB search
MPPSTLCSAKASYKKLPGLLQLTASHLQWTQDGKKAPSVRVAHVDAASLFSSKEGAAQVR
LKIGLVGDDTGHNFTFTSPQPVALTEREAFKRELTTIIGRNRSIQDAAAPQAPASASVTP
SAVSLSRPKLFPSSHPSSSRAASVSSDARTPGTPINDPINDFRLRKKVLVNNPELAALHR
ELVITGQITEAEFWDGREQLLLAQAAAESQKRGRPGQLVDPRPQTVDGGEIKIVVTPQLV
HDIFEEYPVVAKAYDENVPNKLSEAEFWTRYFQSKLFNSHRASIRSTATQHVVKDDPIFD
KYLEKPDDELEPRRQRDGDVEMFLDLGATNEDHGEAWNEKDITMQAGKQRGALPLIRKFN
EHSERLLKSAMSEGPSAKRRRIDSADPWNYYSQIDLQDLHDPKASAGILLEMKDGHRYFE
GRTGVTSAAEQDARASVDFSAALRMARNDLQEWNRNLGQLKIERKSGDAALLSMTENVAT
RLDVKSHKNDIPEDIFSQMRTCQTAANEFLRQFWSSIYPSANEHQLAPATPAQKNAKATR
MVGYLVKTPQKVDAIVTAAHRAGVDRSKITVAMKPVLDAVDKALTFWSTRKVK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgcctccctcgacgctctgctcagcaaaggcttcctacaaaaaattgccaggcttgctc
cagctcactgcgtcgcaccttcaatggactcaggatggaaagaaggctccatcagttcgc
gtcgctcatgttgacgccgcctctctcttctcgagcaaggagggagccgcccaagtcagg
ctgaagatcggtcttgttggtgatgatacaggccacaacttcacctttacttctccacaa
cctgtcgcgcttacggagcgcgaagctttcaaacgcgaactcacaaccatcattgggagg
aatcgtagcatccaggacgctgccgccccccaggcgcccgctagtgcatctgtcacccct
tctgcagtctccctatcacgcccaaaactatttccgtcttctcacccatctagttctcgc
gccgcgtccgtgtcgagtgacgcccgtactcccgggactcctatcaacgatcctatcaac
gatttccgtttacgaaagaaggtcctcgtgaataatcccgaacttgccgcgctgcatcgc
gagctggtcattacgggccagatcacagaagctgagttctgggatggacgagaacaactt
cttctcgctcaagcagcggcggagtctcagaaacgagggcggcctggtcagctagtcgac
ccaagaccgcagaccgtagacggtggcgaaatcaagatcgtcgtcacgccacagttggta
cacgacatttttgaagaatacccggttgttgccaaagcctatgacgagaacgttccgaat
aaactatctgaggcagagttttggacacgatatttccagtcgaagcttttcaattctcac
agagcatccatccggtcaacagcgacccagcatgttgtcaaagatgaccccattttcgac
aaatatctggagaaaccagatgatgagttggagcctcgacgtcagagagatggtgatgta
gagatgttcctagatcttggggcaaccaacgaagatcatggggaggcttggaatgagaaa
gatatcactatgcaagcaggaaagcaaagaggtgccctgccactcatccgaaaattcaac
gagcattctgagcgattgctcaagtcagcaatgtcggaaggtccttcggcaaaaagaaga
cggatagattctgcagacccttggaattattactcacaaatagatcttcaagacctacac
gatcctaaagcctcagcgggtatcttgttagagatgaaagacggacacagatacttcgag
ggacgaacaggagtaactagtgcagctgaacaagatgcacgggcatctgtagacttttca
gctgctcttcgaatggcaaggaacgatcttcaagaatggaataggaaccttgggcagttg
aagattgagcgaaaatcaggcgacgcagcgctgctttcaatgactgaaaatgtagccact
cgtctcgatgttaaatcgcacaaaaacgacatccctgaagacattttcagtcagatgcgc
acctgtcaaacggccgccaacgaatttctacgacaattttggtcctcgatctacccgtcc
gcgaacgagcatcagctcgcgcctgctacgcccgcacagaagaacgccaaggccacgcgc
atggtgggataccttgtcaagacaccccaaaaggtcgacgccatcgtgactgcggcccac
cgtgcaggtgtagatcggagcaagatcacagtcgcgatgaaacctgtgttggacgccgtc
gacaaggcgctgacattctggagcacacgcaaggtcaaatga
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