Heterobasidion irregulare: HETIRDRAFT_61922
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Entry
HETIRDRAFT_61922 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
hir
Heterobasidion irregulare
Pathway
hir03022
Basal transcription factors
hir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HETIRDRAFT_61922
09124 Replication and repair
03420 Nucleotide excision repair
HETIRDRAFT_61922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hir03021
]
HETIRDRAFT_61922
03400 DNA repair and recombination proteins [BR:
hir03400
]
HETIRDRAFT_61922
Transcription machinery [BR:
hir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HETIRDRAFT_61922
DNA repair and recombination proteins [BR:
hir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HETIRDRAFT_61922
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
20678575
NCBI-ProteinID:
XP_009546973
JGI:
Hetan2_61922
UniProt:
W4K6A4
LinkDB
All DBs
Position
Unknown
AA seq
346 aa
AA seq
DB search
MDKPSHLSLVLDLSPSQWLLSAQHTNPFPLPFHTFLAHLLTFLNAHAAAQHDNSLAVFGA
FPGKSVQLYSSTDPHTEPDEGSPSLANAVADANSYRPFKLVDAAIARAIARELDLLGEQD
EEAPVALVGALTKALCYINRITHVPAGATTPEDPATQASPRILILSVSPDLSSSYIPIMN
SIFSAQKLKITIDVCKLFGPETVFLQQAAHLTGGSYIYLERRDALLQYLIMSFLPPPAVR
AVLAVPTQDKIDFRAACFCHKNIVDIGFVCSVCLSIFCSPVPVCSTCRTKFPIKTLQRLN
ASRPPGPINRAAGSGTGGAGAANGTPPRPLQSAAGRQNTPLSASLR
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggataaaccgtcccatctgtcgctcgtcctcgacctctccccttcccaatggctcctc
tccgctcagcacacgaacccctttccgcttcctttccacaccttcctcgcacacctcctc
accttcctcaacgcccacgccgccgcacaacacgataactccctcgccgtcttcggcgcc
ttccccgggaagagcgtgcagctctattcctcgactgacccgcacacggagcctgatgaa
ggctccccctctctcgcgaatgcagtagcagacgccaactcatatcggccgttcaagctc
gtcgacgctgccatcgcacgcgccatcgcacgcgagctagacctactcggcgagcaggat
gaagaagcacccgtcgccctagtcggtgcactcaccaaagcgttatgctatatcaaccgc
atcacgcacgtccccgccggggcgaccacacctgaagaccccgccacccaagcttccccc
cgcatcctcatcctctccgtttcccccgacctctcctcctcgtacatccccatcatgaac
tccatcttctccgcgcagaagctgaaaatcacgatcgacgtgtgcaagctgttcgggccc
gagacagtctttctgcagcaagccgcccatctcacgggcgggtcgtacatctacctcgag
cggcgtgacgcgctgctacagtacctcatcatgtcgttcctcccacctccagcggtccgc
gccgtgctcgccgtgccgacgcaggacaagatcgatttccgcgcggcgtgcttctgccac
aaaaacatcgtagacatcggcttcgtctgctccgtctgcctctccatattctgctcaccg
gtcccagtgtgctcgacctgccggacaaagttccccatcaagacgctccagcgtctgaac
gcgtcccgaccgccagggcccatcaacagagctgcaggcagcggtaccggtggggcgggc
gcggcgaacgggacgcccccgaggccattacagtcggccgcggggcgccagaacacgcca
ttatcagcgagcttgcggtaa
DBGET
integrated database retrieval system