Heterobasidion irregulare: HETIRDRAFT_62543
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Entry
HETIRDRAFT_62543 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hir
Heterobasidion irregulare
Pathway
hir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HETIRDRAFT_62543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hir03021
]
HETIRDRAFT_62543
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_62543
Transcription machinery [BR:
hir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
HETIRDRAFT_62543
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
HETIRDRAFT_62543
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
20678604
NCBI-ProteinID:
XP_009543262
JGI:
Hetan2_62543
UniProt:
W4KFR8
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
MSTFPPNVAYSQIPPATYPFQPHPSYQYPPPSSSLYMVDPNTFRRDYTMRLAELTVNSRP
IIQNLSMVAQEYSRWADVVVQCIENHIRQVPPWMKLPSFYLLDAVSKNVYDPYARHFASV
VTSLFLDSYGLVEPGVRSKMEEMLLTWRTGGPHGRELFGVGPQVAIERGIWGSGVINDSS
LPSGAGTISKSQVISELEFTLGQTERALQSNPFDSVIQNDVSVLHQLRKLVEDGGVSQEE
LRQILTKLRSLARPPPPNQPAPSIGPSKYSSNLSASYTGLSSYPPPVAQPPPPLPPAVQQ
FYSQPPSNPYPSFDQIEAPLSALPSTAGPSSTTTSSTVTMPNISNLFEALLKAGVVSATG
TPTGAGTTTTASEVEESKPAPPEDLDRDEARAYREAILAENIKFTSADISRRRSRIVHFL
YDRLPVQCKQCAIRFQDTVTGRKQMQDHLDMHFRQNRKANQNVGRGHSRSWFVGAEDWVH
DTSASSKGKGNADQSRPLNAKAVAAAEAAKRDAELRAQFVVVPPGDEAKHIACPICKEVL
KSEFQEEDEEWVWLNAVKVEDRIYHATCHAEARTSATTIAARLRMDAAVVRSRSATPDVS
SQRGTPPRTTSVKTESSPLRLAGTKRKVESEDVPGLGSEAEGSPPMKKTLLSTA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtttcctccgaatgtggcatatagccagatccctccagcaacttatcctttc
caacctcacccctcgtatcagtatcccccgccttcctcatcgctctacatggttgatcca
aatacttttcgtcgcgattacacgatgcgcctagcggagctaactgtaaactccaggccc
attattcagaatttatcgatggttgcacaagagtattcgcgatgggcagatgttgttgtt
caatgcatcgagaatcacatacggcaggtgcctccttggatgaagctcccttcattctat
cttttagatgccgtttcgaagaacgtctatgacccgtacgctcgccatttcgcctcggtc
gtcacttcccttttcctcgattcatatggtctcgtcgagcctggtgtccgtagtaaaatg
gaggaaatgcttttgacttggcgtaccggcggtcctcatggtagagaattatttggtgta
ggtcctcaggttgcgatcgagcgaggcatatggggctcaggcgtaatcaatgactcgtcc
ttaccatcgggtgctgggactatctctaaatcacaagttatcagtgaacttgaattcacc
cttggtcaaacagaacgagctctccagtccaatccatttgactctgtgattcaaaatgat
gtcagtgttttacatcagttgagaaaacttgtcgaggacggtggggtatcacaagaagaa
cttcgtcagatccttactaagttacgcagtcttgcacgtccgcctccccctaatcaacct
gctccgtctattggtccgagcaaatattcttccaatttatctgcctcttacaccggtctg
tcatcgtatcctccgcctgtcgctcagccgccgcctcctttgccgcctgccgtccagcag
ttttactctcaaccgccgtcaaatccttatccatcgtttgatcaaattgaggcgccactc
tctgccctgccttcaaccgcgggtccatcatctaccactacaagttcaacagttactatg
cctaacatatccaacttgttcgaggctctattgaaggctggtgtagtctcagcaaccggt
actcccactggagctggcacgacaacaacagcgagcgaggttgaggagagtaagcctgcg
cctcctgaagatcttgatagggatgaggcaagagcttatagagaagctatcctcgctgag
aacatcaagttcacaagtgctgatatctcgaggcgccgttcgcggatagttcattttctt
tatgatcgtttacccgtgcaatgtaaacagtgtgcgatcagattccaggatactgttacg
ggtagaaaacaaatgcaggatcaccttgatatgcatttcagacagaacaggaaagctaac
cagaacgttggccgtggtcacagtcgtagctggttcgttggtgcagaggattgggtgcac
gacacttctgcgagtagtaaaggcaaaggtaacgcggaccagtcccgtcctctgaatgct
aaagctgtcgccgctgccgaggctgcgaagcgtgatgcagagctacgcgctcagttcgtg
gttgtgccgcctggagatgaggcgaagcacatcgcatgtcccatctgtaaggaggttttg
aaatcagagtttcaagaggaagacgaagagtgggtgtggctgaacgccgtcaaagtcgaa
gatcggatttatcatgcgacgtgccacgctgaagcacgaacatccgctactacgatcgct
gcccgccttcgcatggatgcagctgttgtgcgaagtcgttctgctactccggatgtgtcc
tcgcagcgcgggaccccaccacgaacaacatcagtcaagaccgagtcatcgccattgagg
ctcgcaggtaccaagcggaaagttgaatccgaagatgtacctggcctaggcagcgaggct
gaggggtcaccgccaatgaagaaaacgttgctgtccacggcatag
DBGET
integrated database retrieval system
