Heterobasidion irregulare: HETIRDRAFT_62621
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Entry
HETIRDRAFT_62621 CDS
T03455
Name
(RefSeq) putative exoribonuclease, RNB superfamily
KO
K18748
protein SSD1
Organism
hir
Heterobasidion irregulare
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_62621
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
HETIRDRAFT_62621
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_S1
Rrp44_CSD1
Motif
Other DBs
NCBI-GeneID:
20678608
NCBI-ProteinID:
XP_009543266
JGI:
Hetan2_62621
UniProt:
W4KDT7
LinkDB
All DBs
Position
Unknown
AA seq
1084 aa
AA seq
DB search
MPLPQTTTSTLPANAPIFTPGASGFPPPNANEPPPRHRKAASLASSTGSVPATAGFQPSS
LLPNGGVNVLNKGGAQQALGSISYSNALGQDGFDDGFAPPAAFGGHSRQASRADSSWRLN
GGVGGIQQNNAFTADLAQAQAQLQSLQQFRAAAGGHHQKIPSFSFPNMLPNMMAANMMGL
GLGGINLLQQQQQQFQSQLQQQSNQPQRKSLFAPYLPQASLPPLLATGKLVVGILRVNKR
NRSDAYVSTEVLDADIYICGSKDRNRALEGDIVAVELLDVDEVWGTKKEKEEKKRKKEEN
AAYEMKSTAGRKNDKKKDDVEVEGQGLMLFEDEEVTDEVKPQFAGHVVAVVERMPGQLFS
GTLGLLRPSSAATKEKQEAERREREGDRGDEPRRPIDRPKIVWFKPTDKRVPLIAIPTEQ
APPDFVQNSDSYINKLFVACIKRHPISSLHPFGTLVEELGPIGDIEVETSALLKDCNFPT
EDFTESVLKCLPPIPWSIPEREFEIRKDLRNERIFTIDPDTAKDLDDALSVKSNDDGTYD
IGIHIADVSYFVKPNTALDRDARKRATSVYLVQRVVSMLPPALSEELCSLKPGHERLAFS
VILTMTKDARVVKKWFGKTIVKSAAKLSYSNAQNVIDGKLLSDVPVSPEHNASAIEHDIK
ILWDLASELRTRRFQNGALSHESLRLSFTLDESGIPVDCSGYERHESNQLVEEFMLLTNV
TVAQQIAVNLPEQALLRRHDVPIERRLNMLAERAQRLGYNLDTSSSGAIMRSFNAIEDPT
ARKLLELLVFKATHRARYFCAGMLDIAKYHHYALNVPLYTHFTSPIRRYADVLVHRQLEH
VLQGTAESKFAMDRDAVAKVTQQCNIKRDSAQLAQEQSAHLHLCVLISDLTSRYGPVVRQ
AKVVAVLDAAFDVLVPEFGIEKRVHVDQMPIDNHVYDEHAHTLQIYWSDRDVINWLAENS
DDEHLKKVKQNAEQHAVKMEVASRSLHDEKALFDEDDGDDEIVLGRDDKDIDVKNETSKQ
RLLSMAKVMPEFEGLKTTTSGHKIQEIRELMTVPVIVTADLTKSPPVIKVYSVNPYSQEK
AQKQ
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcccgcagaccaccacgtctactctcccggccaatgctcccatcttcacaccc
ggtgcttccggattcccccctcccaatgcgaacgagcctccaccgagacatcgcaaggct
gcttccctggcgtcatcaacaggctctgtaccagcaacagctggcttccaaccaagttct
ctccttccaaacggcggcgtcaacgttctgaacaaaggaggagcccaacaggctcttgga
tctatcagttacagtaacgcccttggacaggatggattcgatgatggctttgctcctcct
gctgcatttggcggacattcccgacaagcgtccagggcggattccagctggcgcctgaat
ggtggcgtcggtggcatccaacaaaacaatgctttcaccgcagaccttgcccaggctcaa
gctcaattgcaaagccttcagcagttccgtgcagccgcaggaggacatcatcagaagatc
ccatctttcagctttcccaatatgctacccaacatgatggccgcgaatatgatgggcctg
ggacttgggggtatcaaccttcttcagcaacagcagcagcagttccagtctcaattgcaa
cagcaatcaaatcagccccaacgcaagtcgcttttcgctccttaccttcctcaggcatct
ctaccaccgctccttgctactggtaaactagtcgttggtatcttgcgcgtgaacaagcgc
aaccgctcagacgcctatgtctctacggaggttttggatgctgacatctatatatgtggg
tcaaaggaccgtaatcgtgccctcgagggcgacattgttgccgtggaactacttgacgtt
gatgaggtgtggggtacgaagaaggaaaaagaggagaagaagaggaaaaaggaggagaac
gcagcgtatgagatgaagagcactgctggacgcaagaatgacaagaagaaggatgacgtc
gaagtcgaaggccaaggccttatgcttttcgaagacgaagaagttaccgacgaagttaag
ccgcagtttgctggtcacgttgtggccgttgtcgagcgaatgcccggccagttgttctcc
ggcaccttgggtctcttgcgtccgtcctccgctgccacgaaggagaaacaggaagctgaa
cgtcgcgaacgcgagggtgatcgtggtgatgaacccaggcgccccattgaccgccccaag
atcgtttggttcaagcctaccgataagcgtgtcccgcttattgccattcctaccgaacaa
gcgcctcctgacttcgttcaaaattctgactcatacatcaacaagctatttgttgcttgc
atcaagcgtcaccctatcagctcgttgcatccctttgggaccttggtcgaggagcttgga
cctatcggcgatatcgaagtggagacgagtgctttactgaaagattgcaatttcccaacg
gaggactttacagagagcgtcctcaagtgtttgccaccaattccctggtcgatccctgaa
agggagttcgagattcgtaaggatcttcgaaatgagcgtatcttcacgatcgatcccgac
acggctaaggatctggatgacgctctttctgtcaagtcgaacgacgacgggacttatgac
atcggtatccatattgccgacgtatcgtacttcgtcaaacccaacacggccttggaccgt
gatgctcgcaaacgcgccacaagcgtttaccttgtccagcgtgttgtctccatgctgcca
cctgcgctcagcgaggagctgtgcagcctgaaacctggacatgaacgtttggcgttctct
gtcatcctgacgatgaccaaggatgctcgagtcgtcaagaaatggtttggcaagacaatt
gtcaaatcggctgcgaagctttcgtattctaatgctcagaatgtcatcgacggcaaactc
ttgtcagacgtaccagtcagcccggaacataatgcctcagctatcgagcacgatatcaag
attctgtgggacttggcaagcgagttgcgcactcgtcgcttccagaatggtgcccttagc
cacgaatctcttcgcctgtctttcactttggatgagtctggcattccagttgactgttcg
ggttatgagcgtcatgaatccaaccagctggttgaggagttcatgcttctcaccaacgtg
actgtcgctcagcagatcgccgtcaatctccctgagcaggcgctccttcgccgccatgat
gttcccatagaacgccgccttaacatgttggcggaacgggctcaacgtttgggatacaat
ctcgacacgtcttcatcaggtgccatcatgcgttccttcaatgctatcgaggatcctacc
gctcgcaaacttttggagttgctggtcttcaaggccactcaccgggcgaggtacttctgt
gccggcatgcttgatattgcgaaatatcatcactacgccttgaacgtgccattgtacact
cattttacgtctcccattcgtcgctatgcggatgtcttagtccaccgtcagcttgaacat
gttctacaaggcaccgctgaaagcaaattcgccatggaccgagatgctgttgccaaggtc
actcagcaatgcaatatcaaacgggactctgctcagctcgcccaagagcagtctgcgcac
cttcatctatgcgtgttgatctcggatttgacttctcgatatgggcctgtcgtgcgccaa
gctaaggtagtcgctgttctcgacgccgctttcgatgtcctcgtccccgaatttggcatc
gaaaagagggtccatgttgaccagatgcccatcgacaatcacgtctatgacgagcacgca
cacacactccagatttattggtccgatcgcgacgtcatcaattggcttgcggaaaacagc
gacgatgagcatctcaagaaggtcaagcaaaacgctgaacagcacgccgtgaagatggag
gtagcctcgcgctcacttcacgacgagaaagctctcttcgatgaagatgatggcgatgat
gagatcgtgttgggccgcgatgacaaggacattgacgtcaagaacgagacgtccaagcaa
cgcttgttgtccatggcgaaggttatgccagagtttgagggcttgaagacaacgacctcc
ggccacaagatccaagaaatcagggagctcatgaccgtccccgtgattgtcacggcggac
ctgacgaagagtccgcctgtgatcaaggtctacagcgtgaacccctactctcaagagaag
gcgcagaagcagtga
DBGET
integrated database retrieval system
