Hermetia illucens (black soldier fly): 119650604
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Entry
119650604 CDS
T08287
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
his
Hermetia illucens (black soldier fly)
Pathway
his03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
his00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119650604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
his03019
]
119650604
03041 Spliceosome [BR:
his03041
]
119650604
03009 Ribosome biogenesis [BR:
his03009
]
119650604
03016 Transfer RNA biogenesis [BR:
his03016
]
119650604
Enzymes [BR:
his01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119650604
Messenger RNA biogenesis [BR:
his03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119650604
Spliceosome [BR:
his03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119650604
Complex C
U4/U6.U5 tri-SnRNP related factors
119650604
Ribosome biogenesis [BR:
his03009
]
Eukaryotic type
Pre-60S particles
Helicases
119650604
Transfer RNA biogenesis [BR:
his03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119650604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
119650604
NCBI-ProteinID:
XP_037909392
LinkDB
All DBs
Position
3:111363490..111393736
Genome browser
AA seq
1019 aa
AA seq
DB search
MADVDDLFDCFESEENQGQLEGPVIAPEEGGGKVGKRIYDDSEDDDSGKRKKSKVESILD
DICIDDVTTRIQVHVIDSPDSCTHELATYPGQEYVPLTQPAGPPAKEYPFVLDPFQKEAI
LCIDNNQSVLVSAHTSAGKTVVAEYAIARSLNLKQRVIYTTPIKALSNQKYREFSEEFKC
VGLVTGDVTINPTASCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEE
TLILLPDNVRYVFLSATIPNARQFAEWVCYLHKQPCHVVYTDYRPTPLQHYLFPAGGDGI
HLVVDEKGQFKEENFNTAMSVLQNAGEAGKGDQKGRRGGIKGVNAGQTNIFKIVKMIMER
NFAPVIIFSFSKKDCEVYAMQMAKLDFNTTEEKKLVDEVFNNAMDVLSEEDRQLPQVENV
LPLLRRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVLFTAPRKF
DGKDFRWVTSGEYIQMSGRAGRRGLDDKGIVILMIDEKVSPNVGRGIVQGKADPINSAFH
LTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPDLYKKVQDKIIELEKIKIPDEHAIA
SYHHIREQLDMLGKQFRSFITKPEYLIPFLQPGRMVKIQKDDEEFEWGIVVNFEKKVKND
ESKNPLNSKSEVTVIVDVLLHVDDDFEKESVPKPCPPDKKGSMEVVPVLHKLISKISSLR
VFYPKDLRPADNRKSVLKTIAEIKKRFPKGPPLLNPNEDMHIKDSEFKAVVDSIDKFEKR
LFAHPLHDSPDLDTVYSKYCQKLQVANDLKVAKSQLKEAKSLLQMDELKYRKRVLRRLGY
CTASDVIEFKGRVACELSSADELLMTEMIFNGVFNSLSIPQSVALLSCFVCDEKSSETPA
STEELSGPLRLMQDLARRIAKVSNECKLDLDEESYVEKFKPYLMDVVLAWCKGASFLNIC
KMTDIFEGSIIRCMRRLEELLRQMCQAAKTIGNTDLENKFSEGIRLLKRDIVFAASLYL
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgtggatgacctcttcgattgctttgaaagcgaagaaaatcaggggcagtta
gaaggtccggttatagctccagaagaaggcggtgggaaagtcggaaagcgcatatatgat
gacagtgaagacgacgactccggcaaacgaaagaaaagtaaagtggaatcgatactagac
gatatttgcatagatgatgtgactacacgaattcaagtgcatgttattgactctccggat
tcatgtacccacgagctagctacatatccaggacaagaatatgttccattaacacagccc
gcaggtccaccagcgaaagagtacccattcgttctggatcccttccaaaaagaagcgatt
ctttgcatagataataaccagtctgtgcttgtgtcagcacacacatccgcgggtaaaacg
gtagttgccgaatatgctattgcacgatcgttaaatttgaagcagcgggtgatttacaca
acacctataaaggctctatccaaccaaaaatatcgggaattcagtgaagaatttaaatgc
gtaggattggtaactggagatgtgacaattaacccgacagcatcttgcctcataatgacc
accgaaattctgagaaacatgctttaccgaggatcagaaatcatgagggaggtaggctgg
gtgattttcgacgaaattcactacatgagagataaagaacgcggggttgtgtgggaagag
acacttattcttctccctgacaatgttcgatatgtttttctttcggctaccatacctaat
gccagacaattcgcagaatgggtatgttatctacacaagcaaccatgccacgtggtatac
actgattaccgtccaactccgttgcaacattacctatttcccgctggtggcgatggaatt
cacttagtggtggatgaaaaggggcaattcaaggaagagaatttcaatacggctatgagc
gtattgcaaaacgctggcgaagctggaaaaggagatcagaaaggccgccgtggaggaatt
aaaggtgtgaatgctgggcagacgaacattttcaaaattgtgaaaatgataatggaaaga
aattttgcaccagttattattttctcgtttagcaaaaaagattgcgaagtttatgctatg
caaatggctaagctagatttcaatacaacggaggaaaaaaaattagttgatgaagttttc
aataatgccatggacgttctctcggaagaggatcgacagttaccgcaggtggaaaatgta
ctacccttgctcagacgtggaattggtattcatcacggtggccttctaccaattctgaaa
gaaactattgagatcctgttcagcgagggactgatcaaggcattgtttgctactgaaacg
tttgctatggggctaaatatgccggctcgaacagtattgtttacagcgcccaggaaattc
gatggaaaagattttcgttgggtgacatcgggtgaatacatacagatgtcgggtcgagct
ggccgtcgtggacttgatgacaaaggaattgttattctgatgattgacgaaaaagtttcg
cccaatgttgggcgaggaattgttcaaggcaaagcggatcctataaattccgcattccac
ttgacttacaacatggtcctaaatttattacgagttgaagaaataaatccagaatatatg
ttggaaagatcgtttttccaattccaaaatcaaagctcaatccctgatttatacaaaaaa
gtgcaagacaagattatagaattagaaaaaataaaaattccagatgagcatgcaattgct
tcttatcatcacataagagagcagttagacatgctaggaaagcaatttcggagttttata
acaaaaccagaatatttgattccatttttgcaaccaggtcgaatggtgaaaattcagaaa
gatgacgaagaattcgagtggggcattgttgtaaatttcgagaagaaagtgaaaaatgat
gaatcgaaaaatccattgaattcaaagtcagaagtgaccgtaattgtggatgtattgcta
catgtcgacgatgatttcgaaaaagagtccgtaccgaaaccatgtccaccagataaaaaa
ggaagtatggaagtggttcccgtcttacataaattaatttcgaaaatatcttcgttgcga
gtgttttatccgaaagaccttcgacccgccgataacagaaagtcggttttaaagacaata
gctgaaataaagaaacgatttcctaagggacccccgcttttgaaccccaatgaggatatg
cacatcaaagattcggaattcaaggcagttgtagattctatcgataaatttgagaaacga
ctatttgcacatcctttacacgactctccagatttggatacagtttattctaaatattgt
cagaaacttcaagtagcaaatgatttgaaggttgctaaatcgcaattaaaagaagctaag
agccttttacaaatggatgaacttaaatacaggaagcgtgttcttcgaagattggggtac
tgtacagcatcagatgtaattgaatttaaaggtagagttgcgtgcgagctaagttctgct
gatgagctcttaatgacggaaatgatttttaatggggtattcaatagtctgtctattccg
caatctgtagcgttactgtcgtgtttcgtttgtgatgagaaaagttcggaaacacctgca
tcaacagaagagctttccggacccctacgacttatgcaggacttggcaaggcgaatagca
aaggtatctaatgaatgcaaactagatttggatgaagaatcatatgttgaaaaattcaaa
ccatacctaatggatgttgtattagcttggtgcaagggtgcgtcttttttgaatatttgt
aaaatgacagatatttttgaaggatctattatccgttgtatgagacgattggaagaatta
ttaaggcaaatgtgccaagccgcaaaaacgattgggaacactgacttagaaaataaattt
tcagagggcattcggttattaaaacgggatatcgtatttgcagcctccctatatttatag
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