Haemophilus influenzae 86-028NP (nontypeable): NTHI0337
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Entry
NTHI0337 CDS
T00248
Symbol
deaD
Name
(GenBank) Cold-shock DEAD-box protein A homolog
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hit
Haemophilus influenzae 86-028NP (nontypeable)
Pathway
hit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTHI0337 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hit03019
]
NTHI0337 (deaD)
03009 Ribosome biogenesis [BR:
hit03009
]
NTHI0337 (deaD)
Enzymes [BR:
hit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NTHI0337 (deaD)
Messenger RNA biogenesis [BR:
hit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NTHI0337 (deaD)
Ribosome biogenesis [BR:
hit03009
]
Prokaryotic type
rRNA helicases
NTHI0337 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AAX87292
UniProt:
Q4QNV5
LinkDB
All DBs
Position
324686..326527
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AA seq
613 aa
AA seq
DB search
MTDKITFNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLNGNDVLGMAQTGSGKTAAFA
LPLLAQIDPSEKHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRA
LKQGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENH
QTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLE
VEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVA
TDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIE
HLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIA
AAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLYR
IEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFAKTRV
LNKQMQMSFLGAVKSDNSRGSDDFNGKRKGRGGDFRGERGRERGNDNRGNRKFNEKSNRT
FSDKPRRDRRSSF
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaaaattacttttaatgacttaggcttacctgagttcatcttaaaagctgtt
tctgacttaggttttgaaaccccttctccaattcaacaagcttgtatcccacatttgctc
aatggcaatgatgtgctaggtatggcacaaacgggtagtggtaaaaccgctgcttttgca
ctgcctttattagcgcaaatcgatccaagtgaaaaacatccacaaatgttagtgatggcg
cctacacgcgaacttgctattcaagttgccgatgcgtgtgaacaatttgttaaatatgca
cacggcactcgcattgttaccttatatggtggccaacgttatgacatccaacttcgtgca
ttaaaacaaggcgcacaagtggttgtgggtacaccaggccgtattcttgaccatattcgt
cgcagaacattaaatctttctgaacttcgttttatcgtattagatgaagccgatgaaatg
ctacgcatgggtttcattgatgatgtagaaaccgtcatggcagaattaccagaaaatcat
caaactgcgttattctctgcaacaatgcctgaaccgatccgtcgtattacgaaacgtttt
atgaatgatccacaagaagtgaagatcaaagtgaataacgaaaatgccccagatatcgac
caaagttgttggtatgtacacggcgtgcgtaaaaacgaagctcttcttcgtttcttagaa
gtggaagattttgatgcagcgattatttttgctcgcactaaaactggtactttagacatt
acagaactacttgaaaaaaatggtttccgttctgccgcacttaatggcgatatgacacaa
caattacgcgaacaaaccctcgatcgcttacgtaacggcagtttagatattgttgtggca
accgatgtggctgcacgcggtattgatattgaacgtatcagccttgtggtgaactacgac
attccgcttgatgcagaatcttatgtacaccgaattgggcgtactggtcgtgctggtcgt
tctggtcgtgctttattatttgttgaacctcgcgagcgtcgtttacttcgtaatattgaa
cacctaatgaaaaaaggtatcaatgaagtagaattgccaaatcatcttgtgttacaagaa
tgccgccgcaaaaaatttgtcgccaaaattacgaaacaactcgagcatcacgatttagaa
caatatcgtagtttattagaagacttattcacagccgatcaggatcaagaagatattgct
gcagcaatgttgatgctgcttcaaggcaaacaaaaattaattcttccacctgatccgcca
atggaaaaacgtcgtcgtgaacgtaatgatcgcggtgatcgccgtgaaaatccacgttca
gctgaacgtcgtggcgaacgtaaaggctatggaaatccacaaccaatggatttatatcgt
atcgaagtcggtcgtgcagatggtgtagaagttcgccatatcgttggtgcgattgctaac
gaaggcgatattaacagccgttatattggtcatattaaactttatgatgactacactacc
gttgaattgccacaaggtatgccgaaagaattattgcaacaattcgctaaaacacgcgta
ttgaataaacaaatgcaaatgtctttcttaggtgcagtaaaatccgataattcccgtggc
agcgatgattttaacggtaaacgtaaaggtcgtggtggcgatttccgtggagagcgcgga
cgtgaacgaggcaatgataatcgtggcaatcgtaaatttaatgaaaaaagtaaccgcact
tttagcgacaaaccacgccgtgatcgtagatcatcattctaa
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