Haemophilus influenzae 86-028NP (nontypeable): NTHI0640
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Entry
NTHI0640 CDS
T00248
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hit
Haemophilus influenzae 86-028NP (nontypeable)
Pathway
hit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NTHI0640 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hit03021
]
NTHI0640 (rpoC)
03400 DNA repair and recombination proteins [BR:
hit03400
]
NTHI0640 (rpoC)
Enzymes [BR:
hit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NTHI0640 (rpoC)
Transcription machinery [BR:
hit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NTHI0640 (rpoC)
DNA repair and recombination proteins [BR:
hit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NTHI0640 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AAX87563
UniProt:
Q4QN34
LinkDB
All DBs
Position
complement(597892..602142)
Genome browser
AA seq
1416 aa
AA seq
DB search
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFEMYIVTEPGMTDLERGQLLTEEQYLDAEDRWQDEFEAK
MGAEAIQDLLKGMDLEAECEKLREELQETNSETKRKKITKRLKLLEAFVQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREEAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMLLQDPREAEKAYRT
GEAELHSRVKVRITEYVKNEAGEFDAKTTLTDTTIGRAILWMIAPKGMPYSLFNQTLGKK
AISKLINEAYRRLGLKEAVMFADQIMYTGFAYAARSGSSVGIDDMEIPAKKYEIISAAEE
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSQEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIVEDDCGTHEGLVMTPLIEGGDEKVPLRELV
LGRVAAEDILKPGAEEVLIPRNTLLDEKLCDVLDANSVDSVKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNTGTVH
LMNAKFVTNDESKLVLTSRNTELTITDAFGRTKEHYKVPYGAVLSKGDGQEVTAGETIAN
WDPHTMPVVSEVSGFVKFVDIIDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPTIK
LVDANGNDIFLPETDVLAQYFLPGKAIVSLDDGAAVKVGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPAEGETYEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVRAVTEYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKAVITKAYDSEFLEGEQVEVARVKIVNRQREAEGKPPVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRHKHRLVDDVVA
KLSEEDEAAIADEFVMTADDASANLAEMLNMADDAE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacaatcaaaaaccagtgaagattttgatgtg
attaaaattgggttagcttccccagatatgatccgttcttggtcatttggtgaagtgaag
aaacctgaaaccattaactaccgtacgttcaaacctgaacgtgatggtcttttctgtgcg
cgtatcttcgggcctgtaaaagattacgaatgtttatgtggtaaatataaacgtttaaaa
caccgtggtgtgatttgtgaaaaatgtggtgttgaagtcactcaaactaaagttcgtcgt
gaacgtatgggtcatattgaacttgcatcgccagttgcacatatttggttcttaaaatca
ttgccgtctcgtatcggtttacttttagatatgccattgcgcgatatcgaacgtgtactt
tattttgaaatgtacatcgtgaccgaaccaggtatgacggacttagagcgcggtcaatta
ttaacagaagaacaataccttgacgctgaagatcgctggcaagatgaatttgaagcgaaa
atgggtgccgaagcgattcaagatctcttaaaaggtatggatcttgaagctgaatgtgaa
aaattacgtgaagaattacaagaaactaactctgaaactaaacgtaaaaaaatcactaaa
cgcttaaaattattagaagcatttgttcaatctggtaataaaccagaatggatggtgatg
acggtattgccagttcttccaccagatttacgcccattagtaccacttgatggcggtcgt
tttgcgacttcagatctgaacgatttatatcgtcgtgtaatcaaccgtaacaatcgttta
aaacgtttattagatttaattgcgccagatattattgtgcgcaacgaaaaacgtatgtta
caagaatctgttgatgccttattagataatggtcgtcgcggtcgtgcaattacgggttct
aaccgtcgtccattaaaatcattagcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaatttattaggtaaacgtgttgattactctggtcgttctgtaatcactgttggccca
tacttgcacttacaccaatgtggtttaccgaagaaaatggcattggaattattccgtccg
tttatctatgcgaaattagaaagccgtggttatgctacgacaatcaaagcggctaagaaa
atggttgagcgtgaagaggcgatcgtttgggatattcttgcagaagttattcgtgaacac
ccaattctattgaaccgtgcgccaacacttcaccgtttgggtatccaagcgtttgaaccg
atcttaatcgaaggtaaagcgattcaattacacccactcgtttgtgcggcgtttaacgca
gacttcgatggtgaccaaatggcggtacatgttccattaacccttgaagcgcaattagaa
gctcgtgcgttgatgatgtccaccaataacgtgctttctccagcaaacggtgatcctatt
atcgttccatcacaagacgtggtattaggtctttactatatgacccgcgaaaaagtgaac
ggtaaaggcgaaggtatgttattgcaagatcctcgcgaagctgaaaaagcatatcgtaca
ggcgaagcagaattacattctcgtgtgaaagtacgtattactgaatatgtgaaaaatgaa
gcgggcgaatttgatgcgaaaaccacgctgactgatacaactatcggtcgtgcaatctta
tggatgatcgcgccgaaaggcatgccttattcattgttcaaccaaacattaggtaaaaaa
gccatttctaaactgattaacgaagcatatcgtcgtttaggtttaaaagaagcggtaatg
tttgctgaccaaattatgtataccggttttgcgtatgcggcacgttctggttcatcagtt
ggtattgatgatatggaaattccagcgaagaaatacgaaattatttctgcagcggaagaa
gaagtagctgagatccaagaacaattccaatcaggtcttgtgacggcaggcgaacgctat
aataaagtaatcgatatttgggctgccgcgaatgagcgcgtagcgaaagcgatgatggaa
aacttatctcaagaagaagtcatcaatcgtgaaggtaatcctgaaaaacaagcgtccttt
aacagtatctttatgatggctgattctggtgcgcgtggttctgcagcgcagattcgtcag
ttagcaggtatgcgtggtttgatggctcgtccagatggctcgatcattgaaaccccaatt
acagcaaacttccgtgaaggtttgaacgtattacagtactttatttcaacccacggtgct
cgtaaaggtttggcggataccgcattaaaaacagcgaactcaggttacttaactcgtcgt
ttagttgatgtggcacaagacttagtgattgtagaagatgactgtggtacgcacgaaggc
ttagtcatgaccccattaattgaaggtggagatgaaaaagtgccacttcgtgaattagta
ttaggtcgtgttgctgcagaagatattttaaaaccgggtgcagaagaagtattaattccg
cgtaacaccttattagatgaaaaactctgtgatgtgttggatgcaaactctgtagatagc
gtaaaagtacgttctgttgtaacttgtgatactgactttggcgtgtgtgcgaaatgttat
ggtcgtgatcttgcgcgtggtcatttaatcaaccaaggcgaagcggtgggggttattgcc
gctcaatctatcggtgagccgggtacacagctaacaatgcgtacgttccatattggtggt
gcggcatctgcggcagcgaaagaatctagtgtgcaagttaaaaacactggtacagtgcat
ttaatgaatgcaaaattcgtgactaacgatgaaagcaaactagtattaacttctcgtaac
acggaattaactattactgatgcatttggtcgtactaaagaacattataaagtgccttat
ggtgcggtattaagcaaaggtgacggtcaagaagtcactgcaggcgaaactatcgcaaat
tgggatccacatacaatgccagttgtctctgaagtatctggttttgtgaaatttgtagac
attattgatggtttaactgtgacgcgtcaaacagatgaattaacaggtttatcatcaatc
gtggttcaagatgtgggtgaacgtgcaactgcgggtaaagatttacgtccaactattaaa
ttagttgatgcaaatggcaacgatattttcttacctgaaactgatgttcttgcacaatac
ttcttacctggtaaagcaattgtaagtttagacgatggcgcagcagtgaaagtaggggaa
ccattagcacgtattccacaagaatctgtgggtactaaagatattactggtggtctaccg
cgcgttgcagatttatttgaagcacgtaaaccaaaagaaccagctatcttggctgaaatt
tctggtatcgtgtctttcggtaaagaaaccaaaggtaaacgccgtttattaattactcct
gcggaaggcgaaacttacgaagaaatgattccaaaatggcgtcagctcaacgtatttgaa
ggcgaaatggtacaacgtggcgatgtaatttctgatggtgctgaaacaccacacgacatt
ttacgtttacgtggcgtgcgtgcagtaactgaatacatcgtgaacgaagtgcaagatgtt
taccgcttacaaggggtaaaaatcaacgataaacatatcgaagttatcgttcgtcaaatg
ttacgtaaagcggtaattactaaagcttacgactcagaattccttgagggagaacaagtc
gaagtggctcgcgtgaaaattgttaatcgccaacgtgaagcagaaggtaaaccaccagtt
gaatttgaacgtgaattattgggtatcaccaaagcgtctcttgcgactgaatccttcatc
tctgccgcatcgttccaagaaactactcgtgttcttaccgaagcagcagtggcaggtaaa
cgtgatgaattacgtggcttgaaagagaacgtaatagtaggtcgattaattcctgcgggt
acaggttttgcgtatcatcaaaatcgtcacaaacatcgtttagttgatgatgtcgtagcg
aaattatctgaagaagatgaagctgctatcgctgatgaatttgttatgactgcagatgat
gcaagtgcgaacttagctgaaatgcttaacatggcagatgatgcggaataa
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integrated database retrieval system
