Haemophilus influenzae 86-028NP (nontypeable): NTHI0641
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Entry
NTHI0641 CDS
T00248
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hit
Haemophilus influenzae 86-028NP (nontypeable)
Pathway
hit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NTHI0641 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hit03021
]
NTHI0641 (rpoB)
03400 DNA repair and recombination proteins [BR:
hit03400
]
NTHI0641 (rpoB)
Enzymes [BR:
hit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NTHI0641 (rpoB)
Transcription machinery [BR:
hit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NTHI0641 (rpoB)
DNA repair and recombination proteins [BR:
hit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NTHI0641 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
FAM133
Motif
Other DBs
NCBI-ProteinID:
AAX87564
UniProt:
Q4QN33
LinkDB
All DBs
Position
complement(602349..606380)
Genome browser
AA seq
1343 aa
AA seq
DB search
MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKDPEGQQGLEAAFRSVFPIV
SNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDKESSSRAVKDIKEN
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAGDKLLMT
LVPERLRGETASFDIEANGKVYVERGRRITARHIKALEKDNISQVVVPSEYILGKVASKD
YVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETLRVDPTYDKT
SALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAFPEGEGAGIL
SNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKVVDGQVT
EEIEYLSVIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDIHYMDVSTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVVAK
RGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGDPINR
GEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEEMQLREAKKD
LTEELEILEAGLFARVRNLLISSGADAAQLDKVDRTKWLEQTIADEEKQNQLEQLAEQYE
ELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAMLKQKQEVE
KLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLRKGLPVATPVFDGADEAEIKELL
KLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVSGNQHMEPGT
PESFNVIMKEIRSLGLNIELDEE
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgggttactcctattctgaaaaaaaacgaattcgtaaagatttcggtaaacgtccgcaa
gttttaaatgttccttatttattaaccattcagttggattcttttgataaatttattcaa
aaagatcctgaaggtcagcaaggtttagaagcggcattccgttctgtatttcctattgta
agcaataatggctatacagaattacaatatgtagattatcgtttagaagagccagagttt
gatgtacgtgagtgccaaattcgtggctcaacttatgcagcaggcttacgtgtaaaatta
cgtttagtgagctacgataaagaatcttcttcacgcgcagttaaagatattaaagaaaat
gaagtttatatgggggaaatcccattaatgactgataacggtacttttgtaattaatggt
accgagcgtgttatcgtttcacaattacaccgtagtccaggtgtattctttgattctgac
aaaggtaaaacccattcttcaggtaaagtgctttataacgcacgcattattccttaccgt
ggttcttggttagattttgaattcgatccaaaagataacttatttgcgcgcattgaccgt
cgccgtaaattaccggcaacaatcattcttcgtgcattaggctacaccactgaagaaatc
ttaaacttattctttgataaaattacctttgaaatcgctggcgataaattgttaatgact
ttagtgccagaacgtttacgtggtgaaacggcttcttttgatattgaagcaaatggcaaa
gtgtatgttgaacgtggtcgtcgcatcactgctcgtcacattaaagcattagaaaaagat
aatatctcacaagtggttgtgccttctgaatatattttaggtaaagttgcgtcgaaagat
tatgttgatttagagtctggcgaaattatttgtcctgcaaatggcgaaatttcgttagaa
accctcgcaaaattagcacaagctggttacaccacgatcgaaactttatttactaatgat
ttagattacggtccatatatttctgaaacgctacgtgtcgatccaacttatgacaaaact
agtgcgctttacgaaatttatcgtatgatgcgtccgggcgagccaccaacaccagaatct
tcagaagcgttattcaataatttattcttctctgcagaacgttatgatttatctacagta
ggtcgtatgaagttcaaccgttctttagcttttccagaaggggaaggtgcgggtatttta
agcaatgaagatattattgcggtaatgcgtaaattgatcgacatccgtaatggtcgtggc
gaagtagacgatattgaccatttgggtaaccgtcgtatccgtagcgtgggcgaaatggct
gaaaaccaattccgtatcggtttagtgcgtgttgaaagagcggtcaaagaacgtctatct
ttaggcgatttagatgcgatcacgccacaagacttaattaacccgaaaccgatttctgcg
gcagtaaaagaattctttggttcttcacagctttcgcaatttatggatcaaaacaaccca
ttgtcagaagtgacacacaaacgtcgtatttctgcattaggtccaggcggtttaacgcgt
gagcgtgcaggctttgaagtgcgtgacgtacataatactcactatggtcgtttatgtccg
attgaaacccctgaaggtccaaacatcggtttgatcaactcactttctgcttttgcacgt
actaatgattatggtttcttagaaacaccatatcgtaaagtggttgatggtcaagttact
gaagaaattgaatacttatctgtaattgatgaagcaaactacatcattgcacaggcaaac
tcaaacttagacgaaaataaccgttttactgatgctttcgttactgctcgtggtgaacgt
ggtgaatctggtttatataaacctgaagatattcactatatggatgtttcgacacaacaa
gtggtatctgttgcggctgcattaattccattccttgagcatgacgatgcgaaccgtgcg
ttgatgggtgcgaacatgcaacgtcaagcagttccaacattacgtgcggataaaccatta
gttggtacaggtatggaaaaaccaatcgcacttgactcaggtgttgcggttgttgcaaaa
cgtggtggtaccgttcagtacgttgatgcgtctcgtattgtgattaaagtaaatgaagat
gaaaccattgcaggtgaagctggtattgatatttataatttaattaaatacacccgctct
aaccaaaatacttgtattaaccaaattccttgtgtgaatttaggcgatccaattaatcgt
ggcgaagtattagcagatggtccttcaactgatttaggggaacttgcattaggtcaaaat
attcgcgtggcgttcatgccttggaacggctataacttcgaagactcaatgttagtttct
gaacgtgttgttcaacaagaccgtttcactacgatccatattcaagaattatcttgtgtt
gcgcgtgatactaagttaggtgcagaagaaattactgcggatattccaaacgtaggtgaa
tcagcgttaagcaaacttgatgaatctggtatcgtttatgtcggtgctgaggttaaaggt
ggcgacatcttagtaggtaaagtaacccctaaaggcgaaactcaattaaccccagaagaa
aaattgttacgtgcaatctttggggaaaaagcttccgatgtgaaagattcttcattacgc
gtgccaaatggtacatcaggtacggttattgatgttcaagtcttcactcgtgatggcgta
gaaaaagataaacgtgcattagaaatcgaagaaatgcaacttcgtgaagcgaaaaaagat
ttaactgaagagttagagattttagaagctggtttatttgctcgtgtgcgtaatcttctt
atttctagtggtgcggatgcagcacaattagataaagtagatcgcactaaatggttagaa
caaaccattgcagatgaagaaaaacaaaaccaattagaacagcttgctgagcaatacgaa
gaacttcgtaaagagtttgaacataaacttgaagtgaaacgtaagaaaatcattaaaggc
gatgatcttgcaccgggcgtattaaaagttgtgaaagtttaccttgcagtgaaacgtcaa
atccagccgggggataaaatggcgggtcgtcacggtaacaaaggtgttatctcgaaaatt
aacccagttgaagatatgccatacgatgaaaatggtcagccagttgaaatcgtattaaac
ccactgggcgtaccgtctcgtatgaacatcggtcagatccttgaaactcacttaggttta
gctgcaaaaggtattggtgatcaaatcaatgcaatgcttaaacaaaaacaagaagtggaa
aaattacgtagctatatccaaaaagcatacgatttattaggtaatggttcacaaaaagtg
gatttaagcacttttactgatgaagaagtattgcgtttagcgggaaatttacgtaagggc
ttaccagttgcaacgccagtgttcgatggtgcagacgaagcggaaatcaaagagctatta
aaacttggtggattaccaacttcaggtcaaataaccctttacgatggtcgtactggcgag
aaatttgaacgtccagtaaccgtgggttatatgtacatgctaaaattgaaccacttagtt
gatgataaaatgcacgctcgttcaacaggttcttatagccttgttacacaacagccactg
ggtggtaaagcacaatttggtggtcagcgtttcggtgagatggaggtatgggcacttgaa
gcatatggtgcagcctacaccttacaagaaatgctaactgtgaaatccgatgatgtgaat
ggtcgtacgaagatgtataaaaatatcgtaagtggcaaccaacatatggagccaggcaca
ccggaatctttcaacgtaattatgaaagaaatccgctcacttggtttaaatatcgagtta
gacgaagagtaa
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integrated database retrieval system
