Haemophilus influenzae 10810 (serotype b): HIB_06380
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Entry
HIB_06380 CDS
T01720
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hiu
Haemophilus influenzae 10810 (serotype b)
Pathway
hiu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hiu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HIB_06380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hiu03021
]
HIB_06380
03400 DNA repair and recombination proteins [BR:
hiu03400
]
HIB_06380
Enzymes [BR:
hiu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HIB_06380
Transcription machinery [BR:
hiu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HIB_06380
DNA repair and recombination proteins [BR:
hiu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HIB_06380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CBW28826
LinkDB
All DBs
Position
complement(637740..641990)
Genome browser
AA seq
1416 aa
AA seq
DB search
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFEMYIVTEPGMTDLERGQLLTEEQYLDAEDRWQDEFEAK
MGAEAIQDLLKGMDLEAECEKLREELQETNSETKRKKITKRLKLLEAFVQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREDAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTREKVNGKGESMLLQDPREAEKAYRT
GEAELHSRVKVRITEYVKNEAGEFDAKTTLTDTTIGRAILWMIAPKGMPYSLFNQTLGKK
AISKLINEAYRRLGLKEAVMFADQIMYTGFAYAARSGSSVGIDDMEIPAKKYEIISAAEE
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSQEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIVEDDCGTHEGLVMTPLIEGGDEKVPLRELV
LGRVAAEDILKPGTEEVLIPRNTLLDEKLCDVLDANSVDSVKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNTGTVH
LMNAKFVTNDEGKLVLTSRNTELTITDAFGRTKEHYKVPYGAVLSKGDGQEVTAGETIAN
WDPHTMPVVSEVSGFVKFVDIIDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPTIK
LVDANGNDIFLPETDVLAQYFLPGKAIVSLDDGAAVKVGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPAEGETYEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVRAVTEYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKAVITKAYDSEFLEGEQVEVARVKIVNRQREAEGKPPVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRHKHRLVDDVVA
KLSEEDEAAIADEFVMTADDASANLAEMLNMADDAE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacaatcaaaaaccagtgaagattttgatgtg
attaaaattgggttagcttccccagatatgatccgttcttggtcatttggtgaagtgaag
aaacctgaaaccattaactaccgtacgttcaaacctgaacgtgatggtcttttctgtgcg
cgtatcttcgggccagtaaaagattacgaatgtttatgtggtaaatataaacgtttaaaa
caccgtggtgtgatttgtgaaaaatgtggtgttgaagtcactcaaactaaagttcgtcgt
gaacgtatgggtcatattgaacttgcatcgccagttgcacatatttggttcttaaaatca
ttgccgtctcgtatcggtttacttttagatatgccattgcgcgatatcgaacgtgtactt
tattttgaaatgtacatcgtgaccgaaccaggtatgacggacttagagcgcggtcaatta
ttaacagaagaacaataccttgacgctgaagatcgttggcaagatgaatttgaagcgaaa
atgggcgccgaagcgattcaagatctcttaaaaggtatggatcttgaagctgaatgtgaa
aaattacgtgaagaattacaagaaactaactctgaaactaaacgtaaaaaaatcactaaa
cgcttaaaattattagaagcatttgttcaatctggtaataaaccagaatggatggtgatg
acggtattgccagttcttccaccagatttacgcccattagtgccacttgatggtggtcgt
tttgcgacttcagatctgaacgatttatatcgtcgtgtaatcaaccgtaacaatcgttta
aaacgtttattagatttaattgcgccagatattattgtgcgcaacgaaaaacgtatgtta
caagaatctgttgatgccttattagataatggtcgtcgcggtcgtgcaattacgggttct
aaccgccgtccattaaaatcattagcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaatttattaggtaaacgtgttgattactctggtcgttctgtaatcactgttggccca
tacttgcacttacaccaatgtggtttaccgaagaaaatggcattggaattattccgtccg
tttatctatgcgaaattagaaagccgtggttatgctacgacaatcaaagcggctaagaaa
atggttgagcgtgaagatgcgatcgtttgggatattcttgcagaagttattcgtgaacac
ccaattctattgaaccgtgcgccaacacttcaccgtttgggtatccaagcgtttgaaccg
atcttaatcgaaggtaaagcgattcaattacacccacttgtttgtgcggcgttcaacgca
gacttcgatggtgaccaaatggcggtacacgttccattaacccttgaagcacaattggaa
gctcgtgcgttgatgatgtccaccaataacgtgctttctccagcaaacggtgatccgatt
atcgttccatcacaagacgtggtattaggtctttactatatgacccgcgaaaaagtgaac
ggtaaaggcgaaagtatgttattgcaagatcctcgcgaagctgaaaaagcatatcgtaca
ggcgaagcggaattacattctcgcgtgaaagtgcgtattactgaatatgtgaaaaatgaa
gcgggcgaatttgatgcgaaaaccacgctgactgatacaactatcggtcgtgcaatctta
tggatgatcgcgccgaaaggcatgccttattcattgttcaaccaaacattaggtaaaaaa
gccatttctaaactgattaacgaagcatatcgtcgtttaggtttaaaagaagcggtaatg
tttgctgaccaaattatgtataccggttttgcgtatgcggcacgttctggttcatcagtt
ggtattgatgatatggaaattccagcgaagaaatacgaaattatttctgcagcggaagaa
gaagtagctgagatccaagaacaattccaatcaggtcttgtgacggcaggcgaacgctat
aataaagtaatcgatatttgggctgccgcgaatgagcgcgtagcgaaagcgatgatggaa
aacttatctcaagaagaagtcatcaatcgtgaaggtaatcctgaaaaacaagcgtccttt
aacagtatctttatgatggctgattctggtgcgcgtggttctgcagctcagattcgtcag
ttagcaggtatgcgtggtttgatggctcgtccagatggctcgatcattgaaaccccaatt
acagcaaacttccgtgaaggtttgaacgtattacagtactttatttcaacccacggtgct
cgtaaaggtttggcggataccgcattaaaaacagcgaactcaggttacttaactcgtcgt
ttagttgatgtggcacaagacttagtgattgtagaagatgactgtggtacgcacgaaggc
ttagtcatgaccccattaatcgaagggggagatgaaaaagttccacttcgtgaattagtg
ttaggtcgtgttgctgcagaagatattttaaaaccgggtacagaagaagtattaattcca
cgtaacactttattagatgaaaaactctgtgatgtgttggatgcaaactctgtagatagc
gtaaaagtacgttctgttgtaacttgtgatactgattttggtgtatgtgcgaaatgttat
ggacgtgatcttgcgcgtggtcatttaatcaaccaaggcgaagcggtgggcgttattgcc
gctcaatctatcggtgagccgggtacacagctaacaatgcgtacgttccatattggtggt
gcggcatctgcggcagcgaaagaatctagtgtgcaagttaaaaacactggtacagtgcat
ttaatgaatgcaaaattcgttactaacgatgaaggtaaattagtattaacgtctcgtaat
actgaattaactattaccgatgcatttggtcgtactaaagaacattataaagtgccttac
ggtgcggtattaagcaaaggtgacggtcaagaagtcactgcaggcgaaactatcgcaaat
tgggatccacatacaatgccagttgtctctgaagtatctggttttgtgaaatttgtagac
attattgatggtttaactgtgacgcgtcaaacagatgaattaacaggtttatcatcaatc
gtggttcaagatgtgggtgaacgtgcaactgcgggtaaagatttacgtccaactattaaa
ttggttgatgcaaatggcaacgatattttcttacctgaaactgatgttcttgcacagtac
ttcttaccgggtaaagcaattgtaagtttagacgatggcgcagcagtgaaagtaggggaa
ccattagcacgtattccgcaagaatctgtgggtactaaagatattactggtggtctacca
cgtgttgcggatttatttgaagcacgtaaaccaaaagaacccgctatcttagctgaaatt
tctggtatcgtgtctttcggtaaagaaaccaaaggtaaacgccgtttattaattactcct
gcagaaggcgaaacttacgaagaaatgattccaaaatggcgtcagctcaacgtatttgaa
ggcgaaatggtacaacgtggcgacgtaatttctgatggtgctgaaacaccacacgacatt
ttacgtttacgtggcgtgcgtgcagtaactgaatacatcgtgaacgaagtgcaagatgtt
taccgcttacaaggggtaaaaatcaacgataaacatatcgaagtaattgttcgccaaatg
ttacgtaaagcggtaattactaaagcttacgactcagaattccttgagggagaacaagtc
gaagtggctcgcgtgaaaattgttaatcgccaacgtgaagcagaaggtaaaccaccagtt
gaatttgaacgtgaattattgggtatcaccaaagcgtctcttgcgactgaatcctttatc
tccgcagcatcgttccaagaaaccacgcgtgttcttaccgaagcggcagtggcaggtaaa
cgtgatgaattacgtggcttgaaagagaacgtaatcgtaggtcgtttaatcccagcaggt
acaggttttgcgtatcatcaaaatcgtcacaaacatcgtttagttgatgatgtcgtagcg
aaattatctgaagaagatgaagccgctatcgctgatgagtttgtcatgactgcagatgat
gctagtgcgaacttagctgaaatgcttaacatggcagatgatgcggaataa
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