Haemophilus influenzae 10810 (serotype b): HIB_10840
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Entry
HIB_10840 CDS
T01720
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hiu
Haemophilus influenzae 10810 (serotype b)
Pathway
hiu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HIB_10840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hiu03400
]
HIB_10840
Enzymes [BR:
hiu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HIB_10840
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HIB_10840
DNA repair and recombination proteins [BR:
hiu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HIB_10840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_IS1595
Zn_ribbon_6
Zn_ribbon_TiaS
DZR
HscB_4_cys
Motif
Other DBs
NCBI-ProteinID:
CBW29271
LinkDB
All DBs
Position
complement(1112614..1113429)
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AA seq
271 aa
AA seq
DB search
MPELPEVETALRGISPYLKNFTIEKVVVRQPKLRWAVSEELITLKNVKIVDLTRRAKYLI
IHTEKGYIIGHLGMSGSVRIVPQNSAIDKHDHIDIVMNNGKLLRYNDPRRFGAWLWTENL
DDFHLFLKLGPEPLSDEFNAEYLFKKSRQKSTALKTFLMDNAVVVGVGNIYANESLFICG
IHPLKLAKNLTRNQCFSLVNTIKDVLRKAIIQGGTTLKDFLQPDGRPGYFAQELLVYGNK
DKPCPKCGGKIESLIIGQRNSFFCPKCQKRG
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcctgaagtcgaaactgcactacgtggtattagcccttatcttaagaat
tttacgattgagaaagttgtcgtgcgccagcctaaattgcgctgggctgtatcagaggaa
ttgataacccttaaaaatgtaaaaattgtcgatctcactcgtcgagcaaaatatttgatt
attcacacggaaaaaggctatatcatcgggcatttgggcatgtcaggttcagtgcgaatt
gtgccacagaatagcgcaatagataaacatgatcatattgatattgtaatgaataatggc
aagttattacgctataacgatcctcgccgtttcggtgcatggttgtggacggagaatcta
gatgactttcatcttttcttaaagttaggccctgaaccactttctgatgaatttaatgca
gaatatttattcaaaaaatctcgtcaaaaatcaaccgcacttaaaactttcttgatggat
aacgctgtggtagtgggcgttggaaatatttatgcgaatgaaagtttgtttatttgtggc
attcatccccttaaactcgctaaaaatttgactcgcaatcaatgtttctctttagtgaac
acgattaaagatgttttgagaaaagccattattcaaggtggaacaacacttaaagatttt
ttacagcccgatggtcgcccaggttattttgcacaagaattattggtgtatggcaataaa
gataaaccttgtccaaagtgcggtggaaaaattgaaagtttaattattggacagcgtaat
agtttcttttgcccgaaatgtcagaaaaggggttag
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