Haemophilus influenzae 10810 (serotype b): HIB_14130
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Entry
HIB_14130 CDS
T01720
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hiu
Haemophilus influenzae 10810 (serotype b)
Pathway
hiu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HIB_14130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hiu03400
]
HIB_14130
Enzymes [BR:
hiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HIB_14130
DNA repair and recombination proteins [BR:
hiu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HIB_14130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
SecA_DEAD
DUF6007
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CBW29600
LinkDB
All DBs
Position
1463282..1466722
Genome browser
AA seq
1146 aa
AA seq
DB search
MKTAFFQPDIPTQPNDHKILGNVLPGADALAISEIAEQNQNLTVVVTPDTRSAVRLSRVL
SELSSQNVCLFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCP
PQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSAVP
FRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEFPTDDKGIEFFRTQFRETFSEIR
RDPEHIYQQISKGTLISGIEYWQPLFFAEMATLFDYLPEQTLFVDMENNQMQGERFYQDA
KQRYEQRKVDPMRPLLSPEKLWLNVDEVNRRLKSYPRITFKAEKVRSSVRQKNLPVAALP
EVTIQSQQKEPLGQLRQFIEHFKGNLLFSVETEGRRETLLDLLSALKLKPKQIQSLEQIE
NEKFSLLVSSLEQGFIIEQSLPVAIIGEANLLGERIQQRSRDKRKTINPDTLVRNLAELK
IGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSDE
SAPLHKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFKYDREEFQQFAATFP
FEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPT
TLLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDV
KFNDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIST
PPARRLSIKTFVRQNDDLVVREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARV
IVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGEL
LGNEQSGQIESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADIELRVPALLPDDYLG
DVNMRLSFYKRIAAAESKAELDELKVELIDRFGLLPDATKNLLQITELRLLVEPLNVVRI
DAGTQGGFIEFSAKAQVNPDKFIQLIQKEPIVYRFDGPFKFKFMKDLSDNKVRLEFVVDL
LRTIAA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacggcttttttccaacctgatattccaacccaacccaatgatcacaaaatttta
ggcaatgtattaccaggcgctgatgcattggcgattagtgaaattgcagagcaaaaccaa
aatttaaccgtagtggtgactccagatacacgaagtgcggtgcgtttatcacgtgtttta
tcggaattaagcagtcaaaatgtatgcctttttcctgattgggaaaccttaccttacgat
accttttctccccatcaagaaattatttcctctcgtttaagtgcgcttttccatttacaa
aatgcgaaaaaaggcattttcttattgccgatttcgacattaatgcaacgcctttgcccg
ccacaatatttacaacacaatgtgcttctgattaaaaaaggcgatcgtttggtcatcgat
aaaatgcgcttacaattagaagccgcgggctatcgagctgtggagcaagtattagaacac
ggcgagtacgcagttcgtggtgctttgttggatcttttcccaatgggaagtgcggtgcct
tttcgccttgatttttttgatgatgaaattgattctattcgcacttttgatgtggatacg
caacgcactcttgatgaaattaactcaattaatcttttgccggctcacgaatttccaacg
gacgacaaagggattgaatttttccgtacgcaatttcgtgaaacttttagtgaaattcgc
cgagatcccgaacatatttatcagcaaatcagtaaaggtaccttgatttctggcattgaa
tattggcagccacttttctttgctgaaatggcgactttgtttgattatttgccagaacaa
acgctgtttgtggatatggaaaacaatcaaatgcaaggcgagcgtttttatcaagatgcc
aaacagcgttatgaacaacgtaaagtggatccgatgcgtcctcttttatcgcctgaaaaa
ttatggcttaatgtagatgaagtcaatcgccgattgaaatcttatccacgtattacattt
aaagcggaaaaagtgcggtcatcggtacgccagaaaaatttacctgttgccgctctacca
gaagtgactattcaatcccagcaaaaagaaccattgggacaattacgtcaatttattgag
cattttaaaggaaatttattgttttctgtggagacggaaggtcgccgagagactttgctt
gatttgctttcagcgttaaaactcaagccaaaacaaattcaatctttagaacagattgaa
aatgaaaaatttagcttgttagtcagctctcttgaacaaggttttataattgaacaatcg
cttcctgttgcgattattggcgaagctaatttacttggcgagcgcattcaacaacgttct
agagacaaacgtaaaacaattaatcctgatacgcttgtacgaaatcttgccgaactgaaa
atagggcagccagttgtgcatcttgatcacggtgtgggacgttatggcggtttggtcacc
ttagatacaggtggcattaaagccgaatatttgctactaaattatgcaaatgaatcgaaa
ctttatgtgccagtgacttcattacatttgattagccgttatgttggtggctctgatgaa
agtgcgccattacataaattagggaacgaggcttgggcgaaatcacgccaaaaagcagcg
gagaaaattcgtgatgtggcggcagagttattagatgtttacgcacaacgtgaagcgaag
aaaggctttgcctttaaatatgatcgtgaagaatttcagcaatttgctgcaacctttcct
tttgaagaaacctacgatcaggaaatggcaattaatgcggtaatttcggatatgtgtcag
ccaaaagcaatggatcgccttgtttgtggtgatgtgggttttggtaaaactgaagtggca
atgcgcgctgcgtttttggctgtgatgaatcataagcaagtagcagtgctagtgccaacc
acactgttagcccaacagcattatgagaattttaaagatcgttttgcgaatttgcctgtg
aatgtcgaagtgttatcgcgtttcaaaactgcaaaagaacaaaaacaaattctggaaaac
cttgcagaaggcaaagtcgatatactgattggtacccataaattaattcaatcagatgta
aaatttaacgatcttggattgttgattattgatgaagaacatcgttttggtgtagggcaa
aaagagaaaataaaacagcttcgtgcgaatatcgatattcttacgctaacggcaacgcca
attcctcgaacgcttaatatggcgatgaatggcattcgtgatctttccattatttctacg
cctcctgcgcgccgattaagtattaaaaccttcgtccgtcagaatgacgatcttgttgta
cgagaagcgattttgcgtgaaattctccgaggtgggcaggtttattatctccacaatgat
gtcgcaagcattgaaaatacagcagaaaaactgaccgcacttgtgccagaggcgcgagta
attgtggggcacggacaaatgagagaacgtgagttagaacgtgtgatgagtgatttttat
catcagcgttataacgtcttagtttgttcaaccattatcgaaacgggtattgatgtacca
acggcaaataccattattattgaacgagcggatcattttggtttggctcagttgcatcaa
ttacgtggacgagtcgggcgttcacatcatcaggcttatgcttatttgcttacgccaccg
ccaaagatgatgacaaaagatgctgaacgccgtctagatgcgttggaaaatcttgataac
cttggtgcaggttttatcttggcaacccacgatttagagattcgtggtgctggcgaatta
cttggaaacgaacaaagtggacaaattgaaagcatcggtttttcactttatatggaatta
ttggatgcagcggttaaagcgttaaaagaagggcgtgaaccatcattagaagaattgacg
caacaacaagcggatattgaattgcgtgtgcctgctttactgcctgatgattatctagga
gacgtgaatatgcgtttatccttttataaacgcattgctgcagcagagagtaaagcagaa
ttagatgaattaaaagttgagttgattgacagatttggattattgcctgatgcaacgaaa
aatttattacaaattacagagttgcgtttattggttgagccgttgaacgttgtgcgaatt
gatgctggaacacaaggcggttttattgagttttcagcaaaagcacaagtgaatccagat
aaatttattcaattaattcaaaaagaacctattgtgtatcgatttgatggcccattcaaa
tttaagtttatgaaagatctatccgataacaaagtgcggttagaatttgtggtggatttg
ttaagaacgattgctgcataa
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